Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000076
- Gene count gene family
- 1177
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 39 | 2.71% | 3.31% | 1.22 |
Arabidopsis lyrata | 32,670 | 40 | 3.23% | 3.4% | 1.05 |
Capsella rubella | 26,521 | 39 | 2.62% | 3.31% | 1.26 |
Brassica rapa | 40,977 | 64 | 4.05% | 5.44% | 1.34 |
Thellungiella parvula | 25,691 | 43 | 2.54% | 3.65% | 1.44 |
Carica papaya | 28,027 | 59 | 2.77% | 5.01% | 1.81 |
Gossypium raimondii | 37,587 | 51 | 3.71% | 4.33% | 1.17 |
Theobroma cacao | 29,484 | 31 | 2.91% | 2.63% | 0.9 |
Citrus sinensis | 25,467 | 31 | 2.51% | 2.63% | 1.05 |
Eucalyptus grandis | 36,449 | 27 | 3.6% | 2.29% | 0.64 |
Cucumis melo | 27,514 | 30 | 2.72% | 2.55% | 0.94 |
Citrullus lanatus | 23,477 | 28 | 2.32% | 2.38% | 1.03 |
Prunus persica | 27,864 | 31 | 2.75% | 2.63% | 0.96 |
Malus domestica | 63,546 | 90 | 6.27% | 7.65% | 1.22 |
Fragaria vesca | 34,809 | 29 | 3.44% | 2.46% | 0.72 |
Lotus japonicus | 29,598 | 17 | 2.92% | 1.44% | 0.49 |
Medicago truncatula | 50,893 | 41 | 5.03% | 3.48% | 0.69 |
Glycine max | 54,257 | 72 | 5.36% | 6.12% | 1.14 |
Ricinus communis | 31,221 | 26 | 3.08% | 2.21% | 0.72 |
Manihot esculenta | 30,748 | 45 | 3.04% | 3.82% | 1.26 |
Populus trichocarpa | 41,434 | 47 | 4.09% | 3.99% | 0.98 |
Vitis vinifera | 26,504 | 29 | 2.62% | 2.46% | 0.94 |
Solanum lycopersicum | 34,813 | 36 | 3.44% | 3.06% | 0.89 |
Solanum tuberosum | 35,085 | 38 | 3.46% | 3.23% | 0.93 |
Beta vulgaris | 25,625 | 27 | 2.53% | 2.29% | 0.91 |
Zea mays | 39,323 | 52 | 3.88% | 4.42% | 1.14 |
Oryza sativa ssp. japonica | 40,738 | 40 | 4.02% | 3.4% | 0.85 |
Amborella trichopoda | 26,931 | 23 | 2.66% | 1.95% | 0.73 |
Physcomitrella patens | 32,400 | 30 | 3.2% | 2.55% | 0.8 |
Ostreococcus lucimarinus | 7,805 | 10 | 0.77% | 0.85% | 1.1 |
Chlamydomonas reinhardtii | 17,819 | 12 | 1.76% | 1.02% | 0.58 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 79 | 5.93% | 6.71% | 1.13 |
Camelineae | 3 | 86,607 | 118 | 8.55% | 10.03% | 1.17 |
ND_Brassicaceae1 | 2 | 66,668 | 107 | 6.58% | 9.09% | 1.38 |
Brassicaceae | 5 | 153,275 | 225 | 15.14% | 19.12% | 1.26 |
Brassicales | 6 | 181,302 | 284 | 17.9% | 24.13% | 1.35 |
Malvales | 2 | 67,071 | 82 | 6.62% | 6.97% | 1.05 |
ND_Malvids1 | 8 | 248,373 | 366 | 24.53% | 31.1% | 1.27 |
ND_Malvids2 | 9 | 273,840 | 397 | 27.04% | 33.73% | 1.25 |
Malvids | 10 | 310,289 | 424 | 30.64% | 36.02% | 1.18 |
Benincaseae | 2 | 50,991 | 58 | 5.04% | 4.93% | 0.98 |
Maloideae | 2 | 91,410 | 121 | 9.03% | 10.28% | 1.14 |
Rosaceae | 3 | 126,219 | 150 | 12.46% | 12.74% | 1.02 |
ND_Fabids1 | 5 | 177,210 | 208 | 17.5% | 17.67% | 1.01 |
Galegoids | 2 | 80,491 | 58 | 7.95% | 4.93% | 0.62 |
Papilionoideae | 3 | 134,748 | 130 | 13.31% | 11.05% | 0.83 |
ND_Fabids2 | 8 | 311,958 | 338 | 30.8% | 28.72% | 0.93 |
Euphorbiaceae | 2 | 61,969 | 71 | 6.12% | 6.03% | 0.99 |
Malpighiales | 3 | 103,403 | 118 | 10.21% | 10.03% | 0.98 |
Fabids | 11 | 415,361 | 456 | 41.02% | 38.74% | 0.94 |
Rosids1 | 21 | 725,650 | 880 | 71.66% | 74.77% | 1.04 |
Rosids | 22 | 752,154 | 909 | 74.27% | 77.23% | 1.04 |
Solanum | 2 | 69,898 | 74 | 6.9% | 6.29% | 0.91 |
ND_Dicots | 24 | 822,052 | 983 | 81.17% | 83.52% | 1.03 |
Dicots | 25 | 847,677 | 1,010 | 83.71% | 85.81% | 1.03 |
Monocots | 2 | 80,061 | 92 | 7.91% | 7.82% | 0.99 |
Angiosperms | 27 | 927,738 | 1,102 | 91.61% | 93.63% | 1.02 |
Magnoliophyta | 28 | 954,669 | 1,125 | 94.27% | 95.58% | 1.01 |
Embryophyta | 29 | 987,069 | 1,155 | 97.47% | 98.13% | 1.01 |
Chlorophyta | 2 | 25,624 | 22 | 2.53% | 1.87% | 0.74 |
Viridiplantae | 31 | 1,012,693 | 1,177 | 100% | 100% | 1 |