Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000067
- Gene count gene family
- 1271
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 40 | 2.71% | 3.15% | 1.16 |
Arabidopsis lyrata | 32,670 | 38 | 3.23% | 2.99% | 0.93 |
Capsella rubella | 26,521 | 38 | 2.62% | 2.99% | 1.14 |
Brassica rapa | 40,977 | 66 | 4.05% | 5.19% | 1.28 |
Thellungiella parvula | 25,691 | 31 | 2.54% | 2.44% | 0.96 |
Carica papaya | 28,027 | 40 | 2.77% | 3.15% | 1.14 |
Gossypium raimondii | 37,587 | 73 | 3.71% | 5.74% | 1.55 |
Theobroma cacao | 29,484 | 52 | 2.91% | 4.09% | 1.41 |
Citrus sinensis | 25,467 | 30 | 2.51% | 2.36% | 0.94 |
Eucalyptus grandis | 36,449 | 30 | 3.6% | 2.36% | 0.66 |
Cucumis melo | 27,514 | 35 | 2.72% | 2.75% | 1.01 |
Citrullus lanatus | 23,477 | 32 | 2.32% | 2.52% | 1.09 |
Prunus persica | 27,864 | 45 | 2.75% | 3.54% | 1.29 |
Malus domestica | 63,546 | 80 | 6.27% | 6.29% | 1 |
Fragaria vesca | 34,809 | 100 | 3.44% | 7.87% | 2.29 |
Lotus japonicus | 29,598 | 13 | 2.92% | 1.02% | 0.35 |
Medicago truncatula | 50,893 | 42 | 5.03% | 3.3% | 0.66 |
Glycine max | 54,257 | 64 | 5.36% | 5.04% | 0.94 |
Ricinus communis | 31,221 | 44 | 3.08% | 3.46% | 1.12 |
Manihot esculenta | 30,748 | 53 | 3.04% | 4.17% | 1.37 |
Populus trichocarpa | 41,434 | 52 | 4.09% | 4.09% | 1 |
Vitis vinifera | 26,504 | 18 | 2.62% | 1.42% | 0.54 |
Solanum lycopersicum | 34,813 | 43 | 3.44% | 3.38% | 0.98 |
Solanum tuberosum | 35,085 | 50 | 3.46% | 3.93% | 1.14 |
Beta vulgaris | 25,625 | 18 | 2.53% | 1.42% | 0.56 |
Zea mays | 39,323 | 41 | 3.88% | 3.23% | 0.83 |
Oryza sativa ssp. japonica | 40,738 | 53 | 4.02% | 4.17% | 1.04 |
Amborella trichopoda | 26,931 | 33 | 2.66% | 2.6% | 0.98 |
Physcomitrella patens | 32,400 | 10 | 3.2% | 0.79% | 0.25 |
Ostreococcus lucimarinus | 7,805 | 3 | 0.77% | 0.24% | 0.31 |
Chlamydomonas reinhardtii | 17,819 | 4 | 1.76% | 0.31% | 0.18 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 78 | 5.93% | 6.14% | 1.04 |
Camelineae | 3 | 86,607 | 116 | 8.55% | 9.13% | 1.07 |
ND_Brassicaceae1 | 2 | 66,668 | 97 | 6.58% | 7.63% | 1.16 |
Brassicaceae | 5 | 153,275 | 213 | 15.14% | 16.76% | 1.11 |
Brassicales | 6 | 181,302 | 253 | 17.9% | 19.91% | 1.11 |
Malvales | 2 | 67,071 | 125 | 6.62% | 9.83% | 1.48 |
ND_Malvids1 | 8 | 248,373 | 378 | 24.53% | 29.74% | 1.21 |
ND_Malvids2 | 9 | 273,840 | 408 | 27.04% | 32.1% | 1.19 |
Malvids | 10 | 310,289 | 438 | 30.64% | 34.46% | 1.12 |
Benincaseae | 2 | 50,991 | 67 | 5.04% | 5.27% | 1.05 |
Maloideae | 2 | 91,410 | 125 | 9.03% | 9.83% | 1.09 |
Rosaceae | 3 | 126,219 | 225 | 12.46% | 17.7% | 1.42 |
ND_Fabids1 | 5 | 177,210 | 292 | 17.5% | 22.97% | 1.31 |
Galegoids | 2 | 80,491 | 55 | 7.95% | 4.33% | 0.54 |
Papilionoideae | 3 | 134,748 | 119 | 13.31% | 9.36% | 0.7 |
ND_Fabids2 | 8 | 311,958 | 411 | 30.8% | 32.34% | 1.05 |
Euphorbiaceae | 2 | 61,969 | 97 | 6.12% | 7.63% | 1.25 |
Malpighiales | 3 | 103,403 | 149 | 10.21% | 11.72% | 1.15 |
Fabids | 11 | 415,361 | 560 | 41.02% | 44.06% | 1.07 |
Rosids1 | 21 | 725,650 | 998 | 71.66% | 78.52% | 1.1 |
Rosids | 22 | 752,154 | 1,016 | 74.27% | 79.94% | 1.08 |
Solanum | 2 | 69,898 | 93 | 6.9% | 7.32% | 1.06 |
ND_Dicots | 24 | 822,052 | 1,109 | 81.17% | 87.25% | 1.07 |
Dicots | 25 | 847,677 | 1,127 | 83.71% | 88.67% | 1.06 |
Monocots | 2 | 80,061 | 94 | 7.91% | 7.4% | 0.94 |
Angiosperms | 27 | 927,738 | 1,221 | 91.61% | 96.07% | 1.05 |
Magnoliophyta | 28 | 954,669 | 1,254 | 94.27% | 98.66% | 1.05 |
Embryophyta | 29 | 987,069 | 1,264 | 97.47% | 99.45% | 1.02 |
Chlorophyta | 2 | 25,624 | 7 | 2.53% | 0.55% | 0.22 |
Viridiplantae | 31 | 1,012,693 | 1,271 | 100% | 100% | 1 |