Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000058
- Gene count gene family
- 1347
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 17 | 2.71% | 1.26% | 0.46 |
Arabidopsis lyrata | 32,670 | 25 | 3.23% | 1.86% | 0.58 |
Capsella rubella | 26,521 | 24 | 2.62% | 1.78% | 0.68 |
Brassica rapa | 40,977 | 52 | 4.05% | 3.86% | 0.95 |
Thellungiella parvula | 25,691 | 25 | 2.54% | 1.86% | 0.73 |
Carica papaya | 28,027 | 28 | 2.77% | 2.08% | 0.75 |
Gossypium raimondii | 37,587 | 61 | 3.71% | 4.53% | 1.22 |
Theobroma cacao | 29,484 | 40 | 2.91% | 2.97% | 1.02 |
Citrus sinensis | 25,467 | 34 | 2.51% | 2.52% | 1 |
Eucalyptus grandis | 36,449 | 109 | 3.6% | 8.09% | 2.25 |
Cucumis melo | 27,514 | 22 | 2.72% | 1.63% | 0.6 |
Citrullus lanatus | 23,477 | 18 | 2.32% | 1.34% | 0.58 |
Prunus persica | 27,864 | 44 | 2.75% | 3.27% | 1.19 |
Malus domestica | 63,546 | 123 | 6.27% | 9.13% | 1.46 |
Fragaria vesca | 34,809 | 47 | 3.44% | 3.49% | 1.01 |
Lotus japonicus | 29,598 | 12 | 2.92% | 0.89% | 0.3 |
Medicago truncatula | 50,893 | 57 | 5.03% | 4.23% | 0.84 |
Glycine max | 54,257 | 78 | 5.36% | 5.79% | 1.08 |
Ricinus communis | 31,221 | 31 | 3.08% | 2.3% | 0.75 |
Manihot esculenta | 30,748 | 45 | 3.04% | 3.34% | 1.1 |
Populus trichocarpa | 41,434 | 145 | 4.09% | 10.76% | 2.63 |
Vitis vinifera | 26,504 | 82 | 2.62% | 6.09% | 2.32 |
Solanum lycopersicum | 34,813 | 25 | 3.44% | 1.86% | 0.54 |
Solanum tuberosum | 35,085 | 45 | 3.46% | 3.34% | 0.97 |
Beta vulgaris | 25,625 | 25 | 2.53% | 1.86% | 0.74 |
Zea mays | 39,323 | 26 | 3.88% | 1.93% | 0.5 |
Oryza sativa ssp. japonica | 40,738 | 44 | 4.02% | 3.27% | 0.81 |
Amborella trichopoda | 26,931 | 24 | 2.66% | 1.78% | 0.67 |
Physcomitrella patens | 32,400 | 38 | 3.2% | 2.82% | 0.88 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 0.07% | 0.04 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 42 | 5.93% | 3.12% | 0.53 |
Camelineae | 3 | 86,607 | 66 | 8.55% | 4.9% | 0.57 |
ND_Brassicaceae1 | 2 | 66,668 | 77 | 6.58% | 5.72% | 0.87 |
Brassicaceae | 5 | 153,275 | 143 | 15.14% | 10.62% | 0.7 |
Brassicales | 6 | 181,302 | 171 | 17.9% | 12.69% | 0.71 |
Malvales | 2 | 67,071 | 101 | 6.62% | 7.5% | 1.13 |
ND_Malvids1 | 8 | 248,373 | 272 | 24.53% | 20.19% | 0.82 |
ND_Malvids2 | 9 | 273,840 | 306 | 27.04% | 22.72% | 0.84 |
Malvids | 10 | 310,289 | 415 | 30.64% | 30.81% | 1.01 |
Benincaseae | 2 | 50,991 | 40 | 5.04% | 2.97% | 0.59 |
Maloideae | 2 | 91,410 | 167 | 9.03% | 12.4% | 1.37 |
Rosaceae | 3 | 126,219 | 214 | 12.46% | 15.89% | 1.28 |
ND_Fabids1 | 5 | 177,210 | 254 | 17.5% | 18.86% | 1.08 |
Galegoids | 2 | 80,491 | 69 | 7.95% | 5.12% | 0.64 |
Papilionoideae | 3 | 134,748 | 147 | 13.31% | 10.91% | 0.82 |
ND_Fabids2 | 8 | 311,958 | 401 | 30.8% | 29.77% | 0.97 |
Euphorbiaceae | 2 | 61,969 | 76 | 6.12% | 5.64% | 0.92 |
Malpighiales | 3 | 103,403 | 221 | 10.21% | 16.41% | 1.61 |
Fabids | 11 | 415,361 | 622 | 41.02% | 46.18% | 1.13 |
Rosids1 | 21 | 725,650 | 1,037 | 71.66% | 76.99% | 1.07 |
Rosids | 22 | 752,154 | 1,119 | 74.27% | 83.07% | 1.12 |
Solanum | 2 | 69,898 | 70 | 6.9% | 5.2% | 0.75 |
ND_Dicots | 24 | 822,052 | 1,189 | 81.17% | 88.27% | 1.09 |
Dicots | 25 | 847,677 | 1,214 | 83.71% | 90.13% | 1.08 |
Monocots | 2 | 80,061 | 70 | 7.91% | 5.2% | 0.66 |
Angiosperms | 27 | 927,738 | 1,284 | 91.61% | 95.32% | 1.04 |
Magnoliophyta | 28 | 954,669 | 1,308 | 94.27% | 97.1% | 1.03 |
Embryophyta | 29 | 987,069 | 1,346 | 97.47% | 99.93% | 1.03 |
Chlorophyta | 2 | 25,624 | 1 | 2.53% | 0.07% | 0.03 |
Viridiplantae | 31 | 1,012,693 | 1,347 | 100% | 100% | 1 |