Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000056
- Gene count gene family
- 1395
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 46 | 2.71% | 3.3% | 1.22 |
Arabidopsis lyrata | 32,670 | 53 | 3.23% | 3.8% | 1.18 |
Capsella rubella | 26,521 | 48 | 2.62% | 3.44% | 1.31 |
Brassica rapa | 40,977 | 84 | 4.05% | 6.02% | 1.49 |
Thellungiella parvula | 25,691 | 43 | 2.54% | 3.08% | 1.21 |
Carica papaya | 28,027 | 33 | 2.77% | 2.37% | 0.86 |
Gossypium raimondii | 37,587 | 59 | 3.71% | 4.23% | 1.14 |
Theobroma cacao | 29,484 | 31 | 2.91% | 2.22% | 0.76 |
Citrus sinensis | 25,467 | 43 | 2.51% | 3.08% | 1.23 |
Eucalyptus grandis | 36,449 | 46 | 3.6% | 3.3% | 0.92 |
Cucumis melo | 27,514 | 31 | 2.72% | 2.22% | 0.82 |
Citrullus lanatus | 23,477 | 29 | 2.32% | 2.08% | 0.9 |
Prunus persica | 27,864 | 28 | 2.75% | 2.01% | 0.73 |
Malus domestica | 63,546 | 88 | 6.27% | 6.31% | 1.01 |
Fragaria vesca | 34,809 | 31 | 3.44% | 2.22% | 0.65 |
Lotus japonicus | 29,598 | 18 | 2.92% | 1.29% | 0.44 |
Medicago truncatula | 50,893 | 46 | 5.03% | 3.3% | 0.66 |
Glycine max | 54,257 | 88 | 5.36% | 6.31% | 1.18 |
Ricinus communis | 31,221 | 34 | 3.08% | 2.44% | 0.79 |
Manihot esculenta | 30,748 | 56 | 3.04% | 4.01% | 1.32 |
Populus trichocarpa | 41,434 | 55 | 4.09% | 3.94% | 0.96 |
Vitis vinifera | 26,504 | 32 | 2.62% | 2.29% | 0.87 |
Solanum lycopersicum | 34,813 | 54 | 3.44% | 3.87% | 1.13 |
Solanum tuberosum | 35,085 | 49 | 3.46% | 3.51% | 1.01 |
Beta vulgaris | 25,625 | 28 | 2.53% | 2.01% | 0.79 |
Zea mays | 39,323 | 79 | 3.88% | 5.66% | 1.46 |
Oryza sativa ssp. japonica | 40,738 | 42 | 4.02% | 3.01% | 0.75 |
Amborella trichopoda | 26,931 | 21 | 2.66% | 1.51% | 0.57 |
Physcomitrella patens | 32,400 | 36 | 3.2% | 2.58% | 0.81 |
Ostreococcus lucimarinus | 7,805 | 16 | 0.77% | 1.15% | 1.49 |
Chlamydomonas reinhardtii | 17,819 | 48 | 1.76% | 3.44% | 1.95 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 99 | 5.93% | 7.1% | 1.2 |
Camelineae | 3 | 86,607 | 147 | 8.55% | 10.54% | 1.23 |
ND_Brassicaceae1 | 2 | 66,668 | 127 | 6.58% | 9.1% | 1.38 |
Brassicaceae | 5 | 153,275 | 274 | 15.14% | 19.64% | 1.3 |
Brassicales | 6 | 181,302 | 307 | 17.9% | 22.01% | 1.23 |
Malvales | 2 | 67,071 | 90 | 6.62% | 6.45% | 0.97 |
ND_Malvids1 | 8 | 248,373 | 397 | 24.53% | 28.46% | 1.16 |
ND_Malvids2 | 9 | 273,840 | 440 | 27.04% | 31.54% | 1.17 |
Malvids | 10 | 310,289 | 486 | 30.64% | 34.84% | 1.14 |
Benincaseae | 2 | 50,991 | 60 | 5.04% | 4.3% | 0.85 |
Maloideae | 2 | 91,410 | 116 | 9.03% | 8.32% | 0.92 |
Rosaceae | 3 | 126,219 | 147 | 12.46% | 10.54% | 0.85 |
ND_Fabids1 | 5 | 177,210 | 207 | 17.5% | 14.84% | 0.85 |
Galegoids | 2 | 80,491 | 64 | 7.95% | 4.59% | 0.58 |
Papilionoideae | 3 | 134,748 | 152 | 13.31% | 10.9% | 0.82 |
ND_Fabids2 | 8 | 311,958 | 359 | 30.8% | 25.73% | 0.84 |
Euphorbiaceae | 2 | 61,969 | 90 | 6.12% | 6.45% | 1.05 |
Malpighiales | 3 | 103,403 | 145 | 10.21% | 10.39% | 1.02 |
Fabids | 11 | 415,361 | 504 | 41.02% | 36.13% | 0.88 |
Rosids1 | 21 | 725,650 | 990 | 71.66% | 70.97% | 0.99 |
Rosids | 22 | 752,154 | 1,022 | 74.27% | 73.26% | 0.99 |
Solanum | 2 | 69,898 | 103 | 6.9% | 7.38% | 1.07 |
ND_Dicots | 24 | 822,052 | 1,125 | 81.17% | 80.65% | 0.99 |
Dicots | 25 | 847,677 | 1,153 | 83.71% | 82.65% | 0.99 |
Monocots | 2 | 80,061 | 121 | 7.91% | 8.67% | 1.1 |
Angiosperms | 27 | 927,738 | 1,274 | 91.61% | 91.33% | 1 |
Magnoliophyta | 28 | 954,669 | 1,295 | 94.27% | 92.83% | 0.98 |
Embryophyta | 29 | 987,069 | 1,331 | 97.47% | 95.41% | 0.98 |
Chlorophyta | 2 | 25,624 | 64 | 2.53% | 4.59% | 1.81 |
Viridiplantae | 31 | 1,012,693 | 1,395 | 100% | 100% | 1 |