Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000053
- Gene count gene family
- 1435
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 52 | 2.71% | 3.62% | 1.34 |
Arabidopsis lyrata | 32,670 | 48 | 3.23% | 3.34% | 1.03 |
Capsella rubella | 26,521 | 51 | 2.62% | 3.55% | 1.35 |
Brassica rapa | 40,977 | 84 | 4.05% | 5.85% | 1.44 |
Thellungiella parvula | 25,691 | 46 | 2.54% | 3.21% | 1.26 |
Carica papaya | 28,027 | 31 | 2.77% | 2.16% | 0.78 |
Gossypium raimondii | 37,587 | 70 | 3.71% | 4.88% | 1.32 |
Theobroma cacao | 29,484 | 30 | 2.91% | 2.09% | 0.72 |
Citrus sinensis | 25,467 | 35 | 2.51% | 2.44% | 0.97 |
Eucalyptus grandis | 36,449 | 42 | 3.6% | 2.93% | 0.81 |
Cucumis melo | 27,514 | 36 | 2.72% | 2.51% | 0.92 |
Citrullus lanatus | 23,477 | 37 | 2.32% | 2.58% | 1.11 |
Prunus persica | 27,864 | 40 | 2.75% | 2.79% | 1.01 |
Malus domestica | 63,546 | 93 | 6.27% | 6.48% | 1.03 |
Fragaria vesca | 34,809 | 40 | 3.44% | 2.79% | 0.81 |
Lotus japonicus | 29,598 | 19 | 2.92% | 1.32% | 0.45 |
Medicago truncatula | 50,893 | 66 | 5.03% | 4.6% | 0.91 |
Glycine max | 54,257 | 103 | 5.36% | 7.18% | 1.34 |
Ricinus communis | 31,221 | 31 | 3.08% | 2.16% | 0.7 |
Manihot esculenta | 30,748 | 55 | 3.04% | 3.83% | 1.26 |
Populus trichocarpa | 41,434 | 59 | 4.09% | 4.11% | 1 |
Vitis vinifera | 26,504 | 33 | 2.62% | 2.3% | 0.88 |
Solanum lycopersicum | 34,813 | 49 | 3.44% | 3.41% | 0.99 |
Solanum tuberosum | 35,085 | 57 | 3.46% | 3.97% | 1.15 |
Beta vulgaris | 25,625 | 28 | 2.53% | 1.95% | 0.77 |
Zea mays | 39,323 | 54 | 3.88% | 3.76% | 0.97 |
Oryza sativa ssp. japonica | 40,738 | 56 | 4.02% | 3.9% | 0.97 |
Amborella trichopoda | 26,931 | 31 | 2.66% | 2.16% | 0.81 |
Physcomitrella patens | 32,400 | 31 | 3.2% | 2.16% | 0.68 |
Ostreococcus lucimarinus | 7,805 | 5 | 0.77% | 0.35% | 0.45 |
Chlamydomonas reinhardtii | 17,819 | 23 | 1.76% | 1.6% | 0.91 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 100 | 5.93% | 6.97% | 1.18 |
Camelineae | 3 | 86,607 | 151 | 8.55% | 10.52% | 1.23 |
ND_Brassicaceae1 | 2 | 66,668 | 130 | 6.58% | 9.06% | 1.38 |
Brassicaceae | 5 | 153,275 | 281 | 15.14% | 19.58% | 1.29 |
Brassicales | 6 | 181,302 | 312 | 17.9% | 21.74% | 1.21 |
Malvales | 2 | 67,071 | 100 | 6.62% | 6.97% | 1.05 |
ND_Malvids1 | 8 | 248,373 | 412 | 24.53% | 28.71% | 1.17 |
ND_Malvids2 | 9 | 273,840 | 447 | 27.04% | 31.15% | 1.15 |
Malvids | 10 | 310,289 | 489 | 30.64% | 34.08% | 1.11 |
Benincaseae | 2 | 50,991 | 73 | 5.04% | 5.09% | 1.01 |
Maloideae | 2 | 91,410 | 133 | 9.03% | 9.27% | 1.03 |
Rosaceae | 3 | 126,219 | 173 | 12.46% | 12.06% | 0.97 |
ND_Fabids1 | 5 | 177,210 | 246 | 17.5% | 17.14% | 0.98 |
Galegoids | 2 | 80,491 | 85 | 7.95% | 5.92% | 0.74 |
Papilionoideae | 3 | 134,748 | 188 | 13.31% | 13.1% | 0.98 |
ND_Fabids2 | 8 | 311,958 | 434 | 30.8% | 30.24% | 0.98 |
Euphorbiaceae | 2 | 61,969 | 86 | 6.12% | 5.99% | 0.98 |
Malpighiales | 3 | 103,403 | 145 | 10.21% | 10.1% | 0.99 |
Fabids | 11 | 415,361 | 579 | 41.02% | 40.35% | 0.98 |
Rosids1 | 21 | 725,650 | 1,068 | 71.66% | 74.43% | 1.04 |
Rosids | 22 | 752,154 | 1,101 | 74.27% | 76.72% | 1.03 |
Solanum | 2 | 69,898 | 106 | 6.9% | 7.39% | 1.07 |
ND_Dicots | 24 | 822,052 | 1,207 | 81.17% | 84.11% | 1.04 |
Dicots | 25 | 847,677 | 1,235 | 83.71% | 86.06% | 1.03 |
Monocots | 2 | 80,061 | 110 | 7.91% | 7.67% | 0.97 |
Angiosperms | 27 | 927,738 | 1,345 | 91.61% | 93.73% | 1.02 |
Magnoliophyta | 28 | 954,669 | 1,376 | 94.27% | 95.89% | 1.02 |
Embryophyta | 29 | 987,069 | 1,407 | 97.47% | 98.05% | 1.01 |
Chlorophyta | 2 | 25,624 | 28 | 2.53% | 1.95% | 0.77 |
Viridiplantae | 31 | 1,012,693 | 1,435 | 100% | 100% | 1 |