Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000051
- Gene count gene family
- 1476
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 54 | 2.71% | 3.66% | 1.35 |
Arabidopsis lyrata | 32,670 | 53 | 3.23% | 3.59% | 1.11 |
Capsella rubella | 26,521 | 60 | 2.62% | 4.07% | 1.55 |
Brassica rapa | 40,977 | 77 | 4.05% | 5.22% | 1.29 |
Thellungiella parvula | 25,691 | 49 | 2.54% | 3.32% | 1.31 |
Carica papaya | 28,027 | 40 | 2.77% | 2.71% | 0.98 |
Gossypium raimondii | 37,587 | 53 | 3.71% | 3.59% | 0.97 |
Theobroma cacao | 29,484 | 34 | 2.91% | 2.3% | 0.79 |
Citrus sinensis | 25,467 | 37 | 2.51% | 2.51% | 1 |
Eucalyptus grandis | 36,449 | 51 | 3.6% | 3.46% | 0.96 |
Cucumis melo | 27,514 | 38 | 2.72% | 2.57% | 0.94 |
Citrullus lanatus | 23,477 | 40 | 2.32% | 2.71% | 1.17 |
Prunus persica | 27,864 | 57 | 2.75% | 3.86% | 1.4 |
Malus domestica | 63,546 | 91 | 6.27% | 6.17% | 0.98 |
Fragaria vesca | 34,809 | 44 | 3.44% | 2.98% | 0.87 |
Lotus japonicus | 29,598 | 22 | 2.92% | 1.49% | 0.51 |
Medicago truncatula | 50,893 | 38 | 5.03% | 2.57% | 0.51 |
Glycine max | 54,257 | 86 | 5.36% | 5.83% | 1.09 |
Ricinus communis | 31,221 | 34 | 3.08% | 2.3% | 0.75 |
Manihot esculenta | 30,748 | 64 | 3.04% | 4.34% | 1.43 |
Populus trichocarpa | 41,434 | 60 | 4.09% | 4.07% | 1 |
Vitis vinifera | 26,504 | 42 | 2.62% | 2.85% | 1.09 |
Solanum lycopersicum | 34,813 | 62 | 3.44% | 4.2% | 1.22 |
Solanum tuberosum | 35,085 | 85 | 3.46% | 5.76% | 1.66 |
Beta vulgaris | 25,625 | 19 | 2.53% | 1.29% | 0.51 |
Zea mays | 39,323 | 57 | 3.88% | 3.86% | 0.99 |
Oryza sativa ssp. japonica | 40,738 | 38 | 4.02% | 2.57% | 0.64 |
Amborella trichopoda | 26,931 | 31 | 2.66% | 2.1% | 0.79 |
Physcomitrella patens | 32,400 | 36 | 3.2% | 2.44% | 0.76 |
Ostreococcus lucimarinus | 7,805 | 7 | 0.77% | 0.47% | 0.61 |
Chlamydomonas reinhardtii | 17,819 | 17 | 1.76% | 1.15% | 0.65 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 107 | 5.93% | 7.25% | 1.22 |
Camelineae | 3 | 86,607 | 167 | 8.55% | 11.31% | 1.32 |
ND_Brassicaceae1 | 2 | 66,668 | 126 | 6.58% | 8.54% | 1.3 |
Brassicaceae | 5 | 153,275 | 293 | 15.14% | 19.85% | 1.31 |
Brassicales | 6 | 181,302 | 333 | 17.9% | 22.56% | 1.26 |
Malvales | 2 | 67,071 | 87 | 6.62% | 5.89% | 0.89 |
ND_Malvids1 | 8 | 248,373 | 420 | 24.53% | 28.46% | 1.16 |
ND_Malvids2 | 9 | 273,840 | 457 | 27.04% | 30.96% | 1.14 |
Malvids | 10 | 310,289 | 508 | 30.64% | 34.42% | 1.12 |
Benincaseae | 2 | 50,991 | 78 | 5.04% | 5.28% | 1.05 |
Maloideae | 2 | 91,410 | 148 | 9.03% | 10.03% | 1.11 |
Rosaceae | 3 | 126,219 | 192 | 12.46% | 13.01% | 1.04 |
ND_Fabids1 | 5 | 177,210 | 270 | 17.5% | 18.29% | 1.05 |
Galegoids | 2 | 80,491 | 60 | 7.95% | 4.07% | 0.51 |
Papilionoideae | 3 | 134,748 | 146 | 13.31% | 9.89% | 0.74 |
ND_Fabids2 | 8 | 311,958 | 416 | 30.8% | 28.18% | 0.91 |
Euphorbiaceae | 2 | 61,969 | 98 | 6.12% | 6.64% | 1.08 |
Malpighiales | 3 | 103,403 | 158 | 10.21% | 10.7% | 1.05 |
Fabids | 11 | 415,361 | 574 | 41.02% | 38.89% | 0.95 |
Rosids1 | 21 | 725,650 | 1,082 | 71.66% | 73.31% | 1.02 |
Rosids | 22 | 752,154 | 1,124 | 74.27% | 76.15% | 1.03 |
Solanum | 2 | 69,898 | 147 | 6.9% | 9.96% | 1.44 |
ND_Dicots | 24 | 822,052 | 1,271 | 81.17% | 86.11% | 1.06 |
Dicots | 25 | 847,677 | 1,290 | 83.71% | 87.4% | 1.04 |
Monocots | 2 | 80,061 | 95 | 7.91% | 6.44% | 0.81 |
Angiosperms | 27 | 927,738 | 1,385 | 91.61% | 93.83% | 1.02 |
Magnoliophyta | 28 | 954,669 | 1,416 | 94.27% | 95.93% | 1.02 |
Embryophyta | 29 | 987,069 | 1,452 | 97.47% | 98.37% | 1.01 |
Chlorophyta | 2 | 25,624 | 24 | 2.53% | 1.63% | 0.64 |
Viridiplantae | 31 | 1,012,693 | 1,476 | 100% | 100% | 1 |