Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000042
- Gene count gene family
- 1637
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 47 | 2.71% | 2.87% | 1.06 |
Arabidopsis lyrata | 32,670 | 49 | 3.23% | 2.99% | 0.93 |
Capsella rubella | 26,521 | 44 | 2.62% | 2.69% | 1.03 |
Brassica rapa | 40,977 | 75 | 4.05% | 4.58% | 1.13 |
Thellungiella parvula | 25,691 | 44 | 2.54% | 2.69% | 1.06 |
Carica papaya | 28,027 | 42 | 2.77% | 2.57% | 0.93 |
Gossypium raimondii | 37,587 | 74 | 3.71% | 4.52% | 1.22 |
Theobroma cacao | 29,484 | 48 | 2.91% | 2.93% | 1.01 |
Citrus sinensis | 25,467 | 50 | 2.51% | 3.05% | 1.22 |
Eucalyptus grandis | 36,449 | 58 | 3.6% | 3.54% | 0.98 |
Cucumis melo | 27,514 | 38 | 2.72% | 2.32% | 0.85 |
Citrullus lanatus | 23,477 | 39 | 2.32% | 2.38% | 1.03 |
Prunus persica | 27,864 | 52 | 2.75% | 3.18% | 1.16 |
Malus domestica | 63,546 | 90 | 6.27% | 5.5% | 0.88 |
Fragaria vesca | 34,809 | 43 | 3.44% | 2.63% | 0.76 |
Lotus japonicus | 29,598 | 27 | 2.92% | 1.65% | 0.57 |
Medicago truncatula | 50,893 | 77 | 5.03% | 4.7% | 0.93 |
Glycine max | 54,257 | 128 | 5.36% | 7.82% | 1.46 |
Ricinus communis | 31,221 | 46 | 3.08% | 2.81% | 0.91 |
Manihot esculenta | 30,748 | 59 | 3.04% | 3.6% | 1.18 |
Populus trichocarpa | 41,434 | 65 | 4.09% | 3.97% | 0.97 |
Vitis vinifera | 26,504 | 45 | 2.62% | 2.75% | 1.05 |
Solanum lycopersicum | 34,813 | 76 | 3.44% | 4.64% | 1.35 |
Solanum tuberosum | 35,085 | 80 | 3.46% | 4.89% | 1.41 |
Beta vulgaris | 25,625 | 59 | 2.53% | 3.6% | 1.42 |
Zea mays | 39,323 | 60 | 3.88% | 3.67% | 0.95 |
Oryza sativa ssp. japonica | 40,738 | 68 | 4.02% | 4.15% | 1.03 |
Amborella trichopoda | 26,931 | 37 | 2.66% | 2.26% | 0.85 |
Physcomitrella patens | 32,400 | 17 | 3.2% | 1.04% | 0.33 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 96 | 5.93% | 5.86% | 0.99 |
Camelineae | 3 | 86,607 | 140 | 8.55% | 8.55% | 1 |
ND_Brassicaceae1 | 2 | 66,668 | 119 | 6.58% | 7.27% | 1.1 |
Brassicaceae | 5 | 153,275 | 259 | 15.14% | 15.82% | 1.04 |
Brassicales | 6 | 181,302 | 301 | 17.9% | 18.39% | 1.03 |
Malvales | 2 | 67,071 | 122 | 6.62% | 7.45% | 1.13 |
ND_Malvids1 | 8 | 248,373 | 423 | 24.53% | 25.84% | 1.05 |
ND_Malvids2 | 9 | 273,840 | 473 | 27.04% | 28.89% | 1.07 |
Malvids | 10 | 310,289 | 531 | 30.64% | 32.44% | 1.06 |
Benincaseae | 2 | 50,991 | 77 | 5.04% | 4.7% | 0.93 |
Maloideae | 2 | 91,410 | 142 | 9.03% | 8.67% | 0.96 |
Rosaceae | 3 | 126,219 | 185 | 12.46% | 11.3% | 0.91 |
ND_Fabids1 | 5 | 177,210 | 262 | 17.5% | 16% | 0.91 |
Galegoids | 2 | 80,491 | 104 | 7.95% | 6.35% | 0.8 |
Papilionoideae | 3 | 134,748 | 232 | 13.31% | 14.17% | 1.06 |
ND_Fabids2 | 8 | 311,958 | 494 | 30.8% | 30.18% | 0.98 |
Euphorbiaceae | 2 | 61,969 | 105 | 6.12% | 6.41% | 1.05 |
Malpighiales | 3 | 103,403 | 170 | 10.21% | 10.38% | 1.02 |
Fabids | 11 | 415,361 | 664 | 41.02% | 40.56% | 0.99 |
Rosids1 | 21 | 725,650 | 1,195 | 71.66% | 73% | 1.02 |
Rosids | 22 | 752,154 | 1,240 | 74.27% | 75.75% | 1.02 |
Solanum | 2 | 69,898 | 156 | 6.9% | 9.53% | 1.38 |
ND_Dicots | 24 | 822,052 | 1,396 | 81.17% | 85.28% | 1.05 |
Dicots | 25 | 847,677 | 1,455 | 83.71% | 88.88% | 1.06 |
Monocots | 2 | 80,061 | 128 | 7.91% | 7.82% | 0.99 |
Angiosperms | 27 | 927,738 | 1,583 | 91.61% | 96.7% | 1.06 |
Magnoliophyta | 28 | 954,669 | 1,620 | 94.27% | 98.96% | 1.05 |
Embryophyta | 29 | 987,069 | 1,637 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 1,637 | 100% | 100% | 1 |