Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000016
- Gene count gene family
- 2558
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 55 | 2.71% | 2.15% | 0.79 |
Arabidopsis lyrata | 32,670 | 60 | 3.23% | 2.35% | 0.73 |
Capsella rubella | 26,521 | 56 | 2.62% | 2.19% | 0.84 |
Brassica rapa | 40,977 | 69 | 4.05% | 2.7% | 0.67 |
Thellungiella parvula | 25,691 | 44 | 2.54% | 1.72% | 0.68 |
Carica papaya | 28,027 | 39 | 2.77% | 1.52% | 0.55 |
Gossypium raimondii | 37,587 | 75 | 3.71% | 2.93% | 0.79 |
Theobroma cacao | 29,484 | 71 | 2.91% | 2.78% | 0.96 |
Citrus sinensis | 25,467 | 86 | 2.51% | 3.36% | 1.34 |
Eucalyptus grandis | 36,449 | 202 | 3.6% | 7.9% | 2.19 |
Cucumis melo | 27,514 | 54 | 2.72% | 2.11% | 0.78 |
Citrullus lanatus | 23,477 | 62 | 2.32% | 2.42% | 1.04 |
Prunus persica | 27,864 | 112 | 2.75% | 4.38% | 1.59 |
Malus domestica | 63,546 | 245 | 6.27% | 9.58% | 1.53 |
Fragaria vesca | 34,809 | 97 | 3.44% | 3.79% | 1.1 |
Lotus japonicus | 29,598 | 29 | 2.92% | 1.13% | 0.39 |
Medicago truncatula | 50,893 | 126 | 5.03% | 4.93% | 0.98 |
Glycine max | 54,257 | 111 | 5.36% | 4.34% | 0.81 |
Ricinus communis | 31,221 | 72 | 3.08% | 2.81% | 0.91 |
Manihot esculenta | 30,748 | 87 | 3.04% | 3.4% | 1.12 |
Populus trichocarpa | 41,434 | 126 | 4.09% | 4.93% | 1.21 |
Vitis vinifera | 26,504 | 83 | 2.62% | 3.24% | 1.24 |
Solanum lycopersicum | 34,813 | 95 | 3.44% | 3.71% | 1.08 |
Solanum tuberosum | 35,085 | 120 | 3.46% | 4.69% | 1.36 |
Beta vulgaris | 25,625 | 60 | 2.53% | 2.35% | 0.93 |
Zea mays | 39,323 | 80 | 3.88% | 3.13% | 0.81 |
Oryza sativa ssp. japonica | 40,738 | 97 | 4.02% | 3.79% | 0.94 |
Amborella trichopoda | 26,931 | 136 | 2.66% | 5.32% | 2 |
Physcomitrella patens | 32,400 | 7 | 3.2% | 0.27% | 0.08 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 2 | 1.76% | 0.08% | 0.05 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 115 | 5.93% | 4.5% | 0.76 |
Camelineae | 3 | 86,607 | 171 | 8.55% | 6.68% | 0.78 |
ND_Brassicaceae1 | 2 | 66,668 | 113 | 6.58% | 4.42% | 0.67 |
Brassicaceae | 5 | 153,275 | 284 | 15.14% | 11.1% | 0.73 |
Brassicales | 6 | 181,302 | 323 | 17.9% | 12.63% | 0.71 |
Malvales | 2 | 67,071 | 146 | 6.62% | 5.71% | 0.86 |
ND_Malvids1 | 8 | 248,373 | 469 | 24.53% | 18.33% | 0.75 |
ND_Malvids2 | 9 | 273,840 | 555 | 27.04% | 21.7% | 0.8 |
Malvids | 10 | 310,289 | 757 | 30.64% | 29.59% | 0.97 |
Benincaseae | 2 | 50,991 | 116 | 5.04% | 4.53% | 0.9 |
Maloideae | 2 | 91,410 | 357 | 9.03% | 13.96% | 1.55 |
Rosaceae | 3 | 126,219 | 454 | 12.46% | 17.75% | 1.42 |
ND_Fabids1 | 5 | 177,210 | 570 | 17.5% | 22.28% | 1.27 |
Galegoids | 2 | 80,491 | 155 | 7.95% | 6.06% | 0.76 |
Papilionoideae | 3 | 134,748 | 266 | 13.31% | 10.4% | 0.78 |
ND_Fabids2 | 8 | 311,958 | 836 | 30.8% | 32.68% | 1.06 |
Euphorbiaceae | 2 | 61,969 | 159 | 6.12% | 6.22% | 1.02 |
Malpighiales | 3 | 103,403 | 285 | 10.21% | 11.14% | 1.09 |
Fabids | 11 | 415,361 | 1,121 | 41.02% | 43.82% | 1.07 |
Rosids1 | 21 | 725,650 | 1,878 | 71.66% | 73.42% | 1.02 |
Rosids | 22 | 752,154 | 1,961 | 74.27% | 76.66% | 1.03 |
Solanum | 2 | 69,898 | 215 | 6.9% | 8.41% | 1.22 |
ND_Dicots | 24 | 822,052 | 2,176 | 81.17% | 85.07% | 1.05 |
Dicots | 25 | 847,677 | 2,236 | 83.71% | 87.41% | 1.04 |
Monocots | 2 | 80,061 | 177 | 7.91% | 6.92% | 0.87 |
Angiosperms | 27 | 927,738 | 2,413 | 91.61% | 94.33% | 1.03 |
Magnoliophyta | 28 | 954,669 | 2,549 | 94.27% | 99.65% | 1.06 |
Embryophyta | 29 | 987,069 | 2,556 | 97.47% | 99.92% | 1.03 |
Chlorophyta | 2 | 25,624 | 2 | 2.53% | 0.08% | 0.03 |
Viridiplantae | 31 | 1,012,693 | 2,558 | 100% | 100% | 1 |