Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000014
- Gene count gene family
- 2794
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 74 | 2.71% | 2.65% | 0.98 |
Arabidopsis lyrata | 32,670 | 70 | 3.23% | 2.51% | 0.78 |
Capsella rubella | 26,521 | 79 | 2.62% | 2.83% | 1.08 |
Brassica rapa | 40,977 | 118 | 4.05% | 4.22% | 1.04 |
Thellungiella parvula | 25,691 | 71 | 2.54% | 2.54% | 1 |
Carica papaya | 28,027 | 57 | 2.77% | 2.04% | 0.74 |
Gossypium raimondii | 37,587 | 99 | 3.71% | 3.54% | 0.95 |
Theobroma cacao | 29,484 | 77 | 2.91% | 2.76% | 0.95 |
Citrus sinensis | 25,467 | 73 | 2.51% | 2.61% | 1.04 |
Eucalyptus grandis | 36,449 | 97 | 3.6% | 3.47% | 0.96 |
Cucumis melo | 27,514 | 68 | 2.72% | 2.43% | 0.89 |
Citrullus lanatus | 23,477 | 76 | 2.32% | 2.72% | 1.17 |
Prunus persica | 27,864 | 71 | 2.75% | 2.54% | 0.92 |
Malus domestica | 63,546 | 170 | 6.27% | 6.08% | 0.97 |
Fragaria vesca | 34,809 | 66 | 3.44% | 2.36% | 0.69 |
Lotus japonicus | 29,598 | 45 | 2.92% | 1.61% | 0.55 |
Medicago truncatula | 50,893 | 135 | 5.03% | 4.83% | 0.96 |
Glycine max | 54,257 | 187 | 5.36% | 6.69% | 1.25 |
Ricinus communis | 31,221 | 75 | 3.08% | 2.68% | 0.87 |
Manihot esculenta | 30,748 | 104 | 3.04% | 3.72% | 1.22 |
Populus trichocarpa | 41,434 | 117 | 4.09% | 4.19% | 1.02 |
Vitis vinifera | 26,504 | 77 | 2.62% | 2.76% | 1.05 |
Solanum lycopersicum | 34,813 | 105 | 3.44% | 3.76% | 1.09 |
Solanum tuberosum | 35,085 | 127 | 3.46% | 4.55% | 1.32 |
Beta vulgaris | 25,625 | 93 | 2.53% | 3.33% | 1.32 |
Zea mays | 39,323 | 146 | 3.88% | 5.23% | 1.35 |
Oryza sativa ssp. japonica | 40,738 | 148 | 4.02% | 5.3% | 1.32 |
Amborella trichopoda | 26,931 | 102 | 2.66% | 3.65% | 1.37 |
Physcomitrella patens | 32,400 | 65 | 3.2% | 2.33% | 0.73 |
Ostreococcus lucimarinus | 7,805 | 1 | 0.77% | 0.04% | 0.05 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 0.04% | 0.02 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 144 | 5.93% | 5.15% | 0.87 |
Camelineae | 3 | 86,607 | 223 | 8.55% | 7.98% | 0.93 |
ND_Brassicaceae1 | 2 | 66,668 | 189 | 6.58% | 6.76% | 1.03 |
Brassicaceae | 5 | 153,275 | 412 | 15.14% | 14.75% | 0.97 |
Brassicales | 6 | 181,302 | 469 | 17.9% | 16.79% | 0.94 |
Malvales | 2 | 67,071 | 176 | 6.62% | 6.3% | 0.95 |
ND_Malvids1 | 8 | 248,373 | 645 | 24.53% | 23.09% | 0.94 |
ND_Malvids2 | 9 | 273,840 | 718 | 27.04% | 25.7% | 0.95 |
Malvids | 10 | 310,289 | 815 | 30.64% | 29.17% | 0.95 |
Benincaseae | 2 | 50,991 | 144 | 5.04% | 5.15% | 1.02 |
Maloideae | 2 | 91,410 | 241 | 9.03% | 8.63% | 0.96 |
Rosaceae | 3 | 126,219 | 307 | 12.46% | 10.99% | 0.88 |
ND_Fabids1 | 5 | 177,210 | 451 | 17.5% | 16.14% | 0.92 |
Galegoids | 2 | 80,491 | 180 | 7.95% | 6.44% | 0.81 |
Papilionoideae | 3 | 134,748 | 367 | 13.31% | 13.14% | 0.99 |
ND_Fabids2 | 8 | 311,958 | 818 | 30.8% | 29.28% | 0.95 |
Euphorbiaceae | 2 | 61,969 | 179 | 6.12% | 6.41% | 1.05 |
Malpighiales | 3 | 103,403 | 296 | 10.21% | 10.59% | 1.04 |
Fabids | 11 | 415,361 | 1,114 | 41.02% | 39.87% | 0.97 |
Rosids1 | 21 | 725,650 | 1,929 | 71.66% | 69.04% | 0.96 |
Rosids | 22 | 752,154 | 2,006 | 74.27% | 71.8% | 0.97 |
Solanum | 2 | 69,898 | 232 | 6.9% | 8.3% | 1.2 |
ND_Dicots | 24 | 822,052 | 2,238 | 81.17% | 80.1% | 0.99 |
Dicots | 25 | 847,677 | 2,331 | 83.71% | 83.43% | 1 |
Monocots | 2 | 80,061 | 294 | 7.91% | 10.52% | 1.33 |
Angiosperms | 27 | 927,738 | 2,625 | 91.61% | 93.95% | 1.03 |
Magnoliophyta | 28 | 954,669 | 2,727 | 94.27% | 97.6% | 1.04 |
Embryophyta | 29 | 987,069 | 2,792 | 97.47% | 99.93% | 1.03 |
Chlorophyta | 2 | 25,624 | 2 | 2.53% | 0.07% | 0.03 |
Viridiplantae | 31 | 1,012,693 | 2,794 | 100% | 100% | 1 |