Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000006
- Gene count gene family
- 4746
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 98 | 2.71% | 2.06% | 0.76 |
Arabidopsis lyrata | 32,670 | 109 | 3.23% | 2.3% | 0.71 |
Capsella rubella | 26,521 | 108 | 2.62% | 2.28% | 0.87 |
Brassica rapa | 40,977 | 148 | 4.05% | 3.12% | 0.77 |
Thellungiella parvula | 25,691 | 89 | 2.54% | 1.88% | 0.74 |
Carica papaya | 28,027 | 87 | 2.77% | 1.83% | 0.66 |
Gossypium raimondii | 37,587 | 205 | 3.71% | 4.32% | 1.16 |
Theobroma cacao | 29,484 | 139 | 2.91% | 2.93% | 1.01 |
Citrus sinensis | 25,467 | 236 | 2.51% | 4.97% | 1.98 |
Eucalyptus grandis | 36,449 | 311 | 3.6% | 6.55% | 1.82 |
Cucumis melo | 27,514 | 93 | 2.72% | 1.96% | 0.72 |
Citrullus lanatus | 23,477 | 92 | 2.32% | 1.94% | 0.84 |
Prunus persica | 27,864 | 186 | 2.75% | 3.92% | 1.43 |
Malus domestica | 63,546 | 422 | 6.27% | 8.89% | 1.42 |
Fragaria vesca | 34,809 | 151 | 3.44% | 3.18% | 0.92 |
Lotus japonicus | 29,598 | 84 | 2.92% | 1.77% | 0.61 |
Medicago truncatula | 50,893 | 249 | 5.03% | 5.25% | 1.04 |
Glycine max | 54,257 | 290 | 5.36% | 6.11% | 1.14 |
Ricinus communis | 31,221 | 121 | 3.08% | 2.55% | 0.83 |
Manihot esculenta | 30,748 | 150 | 3.04% | 3.16% | 1.04 |
Populus trichocarpa | 41,434 | 252 | 4.09% | 5.31% | 1.3 |
Vitis vinifera | 26,504 | 152 | 2.62% | 3.2% | 1.22 |
Solanum lycopersicum | 34,813 | 134 | 3.44% | 2.82% | 0.82 |
Solanum tuberosum | 35,085 | 183 | 3.46% | 3.86% | 1.12 |
Beta vulgaris | 25,625 | 109 | 2.53% | 2.3% | 0.91 |
Zea mays | 39,323 | 138 | 3.88% | 2.91% | 0.75 |
Oryza sativa ssp. japonica | 40,738 | 173 | 4.02% | 3.65% | 0.91 |
Amborella trichopoda | 26,931 | 110 | 2.66% | 2.32% | 0.87 |
Physcomitrella patens | 32,400 | 110 | 3.2% | 2.32% | 0.73 |
Ostreococcus lucimarinus | 7,805 | 4 | 0.77% | 0.08% | 0.1 |
Chlamydomonas reinhardtii | 17,819 | 13 | 1.76% | 0.27% | 0.15 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 207 | 5.93% | 4.36% | 0.74 |
Camelineae | 3 | 86,607 | 315 | 8.55% | 6.64% | 0.78 |
ND_Brassicaceae1 | 2 | 66,668 | 237 | 6.58% | 4.99% | 0.76 |
Brassicaceae | 5 | 153,275 | 552 | 15.14% | 11.63% | 0.77 |
Brassicales | 6 | 181,302 | 639 | 17.9% | 13.46% | 0.75 |
Malvales | 2 | 67,071 | 344 | 6.62% | 7.25% | 1.1 |
ND_Malvids1 | 8 | 248,373 | 983 | 24.53% | 20.71% | 0.84 |
ND_Malvids2 | 9 | 273,840 | 1,219 | 27.04% | 25.68% | 0.95 |
Malvids | 10 | 310,289 | 1,530 | 30.64% | 32.24% | 1.05 |
Benincaseae | 2 | 50,991 | 185 | 5.04% | 3.9% | 0.77 |
Maloideae | 2 | 91,410 | 608 | 9.03% | 12.81% | 1.42 |
Rosaceae | 3 | 126,219 | 759 | 12.46% | 15.99% | 1.28 |
ND_Fabids1 | 5 | 177,210 | 944 | 17.5% | 19.89% | 1.14 |
Galegoids | 2 | 80,491 | 333 | 7.95% | 7.02% | 0.88 |
Papilionoideae | 3 | 134,748 | 623 | 13.31% | 13.13% | 0.99 |
ND_Fabids2 | 8 | 311,958 | 1,567 | 30.8% | 33.02% | 1.07 |
Euphorbiaceae | 2 | 61,969 | 271 | 6.12% | 5.71% | 0.93 |
Malpighiales | 3 | 103,403 | 523 | 10.21% | 11.02% | 1.08 |
Fabids | 11 | 415,361 | 2,090 | 41.02% | 44.04% | 1.07 |
Rosids1 | 21 | 725,650 | 3,620 | 71.66% | 76.27% | 1.06 |
Rosids | 22 | 752,154 | 3,772 | 74.27% | 79.48% | 1.07 |
Solanum | 2 | 69,898 | 317 | 6.9% | 6.68% | 0.97 |
ND_Dicots | 24 | 822,052 | 4,089 | 81.17% | 86.16% | 1.06 |
Dicots | 25 | 847,677 | 4,198 | 83.71% | 88.45% | 1.06 |
Monocots | 2 | 80,061 | 311 | 7.91% | 6.55% | 0.83 |
Angiosperms | 27 | 927,738 | 4,509 | 91.61% | 95.01% | 1.04 |
Magnoliophyta | 28 | 954,669 | 4,619 | 94.27% | 97.32% | 1.03 |
Embryophyta | 29 | 987,069 | 4,729 | 97.47% | 99.64% | 1.02 |
Chlorophyta | 2 | 25,624 | 17 | 2.53% | 0.36% | 0.14 |
Viridiplantae | 31 | 1,012,693 | 4,746 | 100% | 100% | 1 |