PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_203	9	74	0.00000169728
Arabidopsis thaliana	mitochondrial	17	CH_ath_27	16	65	2.19891e-19
Arabidopsis thaliana	2	18	CH_ath_64	10	94	0.000000545031
Arabidopsis thaliana	mitochondrial	18	CH_ath_16	29	136	3.72412e-36
Arabidopsis thaliana	2	19	CH_ath_72	8	74	0.0000393175
Arabidopsis thaliana	mitochondrial	19	CH_ath_16	16	65	1.11864e-19
Arabidopsis thaliana	mitochondrial	19	CH_ath_27	15	78	1.49916e-16
Arabidopsis thaliana	mitochondrial	20	CH_ath_15	28	136	7.8889e-35
Gossypium raimondii	Chr01	17	CH_gra_32	17	76	3.45143e-19
Gossypium raimondii	Chr13	17	CH_gra_314	4	6	0.000325013
Gossypium raimondii	Chr01	18	CH_gra_30	17	76	3.45143e-19
Gossypium raimondii	Chr01	19	CH_gra_1	17	76	1.59026e-19
Gossypium raimondii	Chr13	19	CH_gra_5	4	6	0.000272027
Gossypium raimondii	Chr01	20	CH_gra_1	17	76	1.59026e-19
Oryza sativa ssp. japonica	12	17	CH_osa_121	7	27	0.000000011391
Oryza sativa ssp. japonica	12	19	CH_osa_6	6	27	0.00000131778
Solanum lycopersicum	ch08	17	CH_sly_175	5	5	0.000000149005
Solanum lycopersicum	ch08	19	CH_sly_3	4	4	0.0000201788
Zea mays	2	17	CH_zma_181	4	5	0.0000822367
Zea mays	9	17	CH_zma_123	9	78	0.00000379083
Zea mays	mitochondrial	17	CH_zma_52	10	59	0.00000000610563
Zea mays	9	18	CH_zma_25	10	83	0.000000215044
Zea mays	mitochondrial	18	CH_zma_23	14	176	0.00000000378776
Zea mays	2	19	CH_zma_5	4	5	0.0000594451
Zea mays	9	19	CH_zma_4	8	75	0.000043069
Zea mays	mitochondrial	19	CH_zma_1	10	59	0.00000000271359
Zea mays	mitochondrial	20	CH_zma_1	10	59	0.00000000271359

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V