PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00128	17	CH_csi_119	3	4	0.000009814
Eucalyptus grandis	scaffold_10	17	CH_egr_685	3	4	0.0000474093
Eucalyptus grandis	scaffold_2	17	CH_egr_684	3	4	0.0000474093
Eucalyptus grandis	scaffold_3	17	CH_egr_124	7	8	1.22964e-17
Glycine max	Gm09	17	CH_gma_295	3	3	0.0000160313
Malus domestica	13	17	CH_mdo_187	3	7	0.0000759836
Malus domestica	2	17	CH_mdo_200	3	8	0.000121541
Ricinus communis	29912	17	CH_rco_148	3	4	0.00000694107
Solanum lycopersicum	ch01	17	CH_sly_102	6	42	0.000000000593126
Vitis vinifera	chr1	17	CH_vvi_245	3	3	0.00000486007
Vitis vinifera	chr17	17	CH_vvi_246	3	3	0.00000486007

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V