Functional clusters
Information
- Type
- Mapman term
- Identifier
- 35.1.5
- Description
- not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 1 | 17 | CH_ath_227 | 12 | 70 | 0.00000436401 |
Arabidopsis thaliana | 1 | 18 | CH_ath_46 | 19 | 139 | 0.00000000125537 |
Capsella rubella | scaffold_2 | 18 | CH_cru_66 | 21 | 265 | 0.000472567 |
Eucalyptus grandis | scaffold_1 | 17 | CH_egr_123 | 19 | 44 | 1.03033e-17 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_269 | 10 | 14 | 0.0000000000815013 |
Eucalyptus grandis | scaffold_1 | 18 | CH_egr_101 | 19 | 44 | 1.03033e-17 |
Eucalyptus grandis | scaffold_8 | 18 | CH_egr_159 | 10 | 14 | 0.0000000000815013 |
Glycine max | Gm09 | 17 | CH_gma_90 | 14 | 40 | 0.000000000143294 |
Glycine max | Gm09 | 18 | CH_gma_40 | 14 | 40 | 0.000000000143294 |
Gossypium raimondii | Chr09 | 17 | CH_gra_24 | 25 | 79 | 2.72271e-21 |
Gossypium raimondii | Chr09 | 18 | CH_gra_19 | 29 | 95 | 1.04577e-24 |
Malus domestica | 17 | 17 | CH_mdo_202 | 7 | 18 | 0.000132019 |
Malus domestica | 8 | 17 | CH_mdo_289 | 5 | 8 | 0.000495597 |
Malus domestica | 9 | 17 | CH_mdo_191 | 9 | 37 | 0.0000810578 |
Malus domestica | 9 | 18 | CH_mdo_33 | 10 | 60 | 0.000516189 |
Prunus persica | scaffold_6 | 17 | CH_ppe_394 | 6 | 10 | 0.000346712 |
Prunus persica | scaffold_6 | 18 | CH_ppe_103 | 15 | 103 | 0.0000640059 |
Ricinus communis | 29938 | 17 | CH_rco_200 | 6 | 9 | 0.000115395 |
Vitis vinifera | chr1 | 17 | CH_vvi_382 | 11 | 58 | 0.000330944 |
Vitis vinifera | chr1 | 18 | CH_vvi_109 | 11 | 58 | 0.000330944 |
Zea mays | 2 | 17 | CH_zma_38 | 13 | 42 | 0.000000000464306 |
Zea mays | 2 | 18 | CH_zma_17 | 13 | 42 | 0.000000000464306 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |