PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 35.1
Description: not assigned.no ontology

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_310	14	24	0.000104966
Arabidopsis thaliana	3	17	CH_ath_128	18	26	0.00000000753279
Arabidopsis thaliana	5	17	CH_ath_14	30	32	1.76825e-24
Arabidopsis thaliana	5	17	CH_ath_170	11	11	0.000000163032
Arabidopsis thaliana	1	18	CH_ath_82	14	24	0.000104966
Arabidopsis thaliana	3	18	CH_ath_50	18	26	0.00000000753279
Arabidopsis thaliana	5	18	CH_ath_59	11	11	0.000000163032
Arabidopsis thaliana	5	18	CH_ath_24	31	33	1.74959e-25
Brassica rapa	A04	17	CH_bra_179	8	8	0.0000403706
Brassica rapa	A05	17	CH_bra_120	9	9	0.00000302471
Brassica rapa	A07	17	CH_bra_258	7	7	0.000538659
Brassica rapa	A05	18	CH_bra_30	10	12	0.0000129859
Capsella rubella	scaffold_5	17	CH_cru_90	15	18	0.00000000381076
Capsella rubella	scaffold_8	17	CH_cru_129	11	11	0.0000000906577
Capsella rubella	scaffold_5	18	CH_cru_29	15	18	0.00000000381076
Capsella rubella	scaffold_8	18	CH_cru_35	11	11	0.0000000906577
Eucalyptus grandis	scaffold_11	17	CH_egr_515	13	20	0.000000753507
Eucalyptus grandis	scaffold_3	17	CH_egr_514	13	20	0.000000753507
Eucalyptus grandis	scaffold_3	17	CH_egr_756	7	7	0.000185876
Eucalyptus grandis	scaffold_7	17	CH_egr_808	8	10	0.000488409
Eucalyptus grandis	scaffold_7	17	CH_egr_200	26	50	0.000000000000159169
Eucalyptus grandis	scaffold_7	17	CH_egr_719	8	9	0.000103753
Eucalyptus grandis	scaffold_7	17	CH_egr_410	11	12	0.0000000393811
Eucalyptus grandis	scaffold_9	17	CH_egr_623	8	8	0.0000122453
Eucalyptus grandis	scaffold_11	18	CH_egr_210	13	20	0.000000753507
Eucalyptus grandis	scaffold_3	18	CH_egr_209	13	20	0.000000753507
Eucalyptus grandis	scaffold_7	18	CH_egr_140	26	50	0.000000000000159169
Eucalyptus grandis	scaffold_7	18	CH_egr_182	54	263	0.00000000237377
Glycine max	Gm11	17	CH_gma_317	8	8	0.0000343799
Glycine max	Gm15	17	CH_gma_45	20	24	0.00000000000000432311
Glycine max	Gm11	18	CH_gma_76	13	26	0.000263006
Glycine max	Gm15	18	CH_gma_28	20	24	0.00000000000000432311
Malus domestica	2	17	CH_mdo_303	7	9	0.000701504
Prunus persica	scaffold_1	17	CH_ppe_300	18	47	0.000023616
Prunus persica	scaffold_1	17	CH_ppe_217	10	11	0.000000730723
Prunus persica	scaffold_8	17	CH_ppe_96	13	13	0.0000000000233702
Prunus persica	scaffold_1	18	CH_ppe_86	43	202	0.000000894122
Prunus persica	scaffold_1	18	CH_ppe_85	10	11	0.000000730723
Prunus persica	scaffold_1	18	CH_ppe_102	25	92	0.0000606401
Prunus persica	scaffold_8	18	CH_ppe_54	13	13	0.0000000000233702
Vitis vinifera	chr3	17	CH_vvi_222	14	25	0.00000198625
Vitis vinifera	chr3	18	CH_vvi_85	14	25	0.00000198625

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V