PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.99
Description: transport.misc

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_109	3	3	0.000909483
Arabidopsis lyrata	scaffold_3	17	CH_aly_35	5	9	0.00000100992
Arabidopsis lyrata	scaffold_7	17	CH_aly_110	3	3	0.000909483
Arabidopsis thaliana	1	17	CH_ath_277	4	5	0.0000358214
Arabidopsis thaliana	1	17	CH_ath_312	4	6	0.000107139
Arabidopsis thaliana	2	17	CH_ath_94	7	9	0.0000000000132355
Capsella rubella	scaffold_1	17	CH_cru_201	4	4	0.0000137865
Capsella rubella	scaffold_2	17	CH_cru_74	6	6	0.000000000301369
Capsella rubella	scaffold_3	17	CH_cru_202	4	4	0.0000137865
Capsella rubella	scaffold_2	18	CH_cru_56	10	145	0.0000617656
Citrus sinensis	scaffold00013	17	CH_csi_36	6	6	0.000000000786505
Citrus sinensis	scaffold00034	17	CH_csi_131	4	4	0.0000228358
Citrus sinensis	scaffold00047	17	CH_csi_132	4	4	0.0000228358
Citrus sinensis	scaffold00059	17	CH_csi_130	4	4	0.0000228358
Eucalyptus grandis	scaffold_1	17	CH_egr_450	5	5	0.000000104837
Eucalyptus grandis	scaffold_2	17	CH_egr_774	4	6	0.000316765
Eucalyptus grandis	scaffold_2	17	CH_egr_214	8	10	0.000000000000539117
Eucalyptus grandis	scaffold_2	17	CH_egr_508	5	6	0.000000626438
Eucalyptus grandis	scaffold_3	17	CH_egr_567	6	16	0.00000394091
Eucalyptus grandis	scaffold_3	17	CH_egr_233	9	19	0.00000000000513971
Eucalyptus grandis	scaffold_6	17	CH_egr_389	6	8	0.0000000142512
Eucalyptus grandis	scaffold_6	17	CH_egr_721	4	5	0.000106009
Eucalyptus grandis	scaffold_3	18	CH_egr_208	11	115	0.000000596057
Eucalyptus grandis	scaffold_6	18	CH_egr_245	12	208	0.0000262018
Glycine max	Gm03	17	CH_gma_231	5	6	0.00000152521
Glycine max	Gm09	17	CH_gma_332	4	4	0.0000473179
Glycine max	Gm10	17	CH_gma_230	5	6	0.00000152521
Malus domestica	1	17	CH_mdo_156	4	5	0.0000183341
Manihot esculenta	scaffold03264	17	CH_mes_140	4	4	0.0000253427
Manihot esculenta	scaffold03614	17	CH_mes_73	5	5	0.000000146476
Oryza sativa ssp. japonica	10	17	CH_osa_227	6	13	0.00000452174
Oryza sativa ssp. japonica	11	17	CH_osa_392	8	66	0.000411915
Oryza sativa ssp. japonica	12	17	CH_osa_183	10	68	0.00000073222
Oryza sativa ssp. japonica	9	17	CH_osa_175	5	5	0.000000455033
Oryza sativa ssp. japonica	12	18	CH_osa_66	10	68	0.00000073222
Populus trichocarpa	Chr11	17	CH_ptr_394	4	4	0.000224992
Populus trichocarpa	Chr11	17	CH_ptr_136	7	8	0.00000000112548
Prunus persica	scaffold_1	17	CH_ppe_340	4	5	0.0000740743
Prunus persica	scaffold_1	17	CH_ppe_208	5	6	0.000000419688
Prunus persica	scaffold_1	17	CH_ppe_378	4	6	0.000221375
Prunus persica	scaffold_2	17	CH_ppe_183	5	5	0.0000000702248
Prunus persica	scaffold_4	17	CH_ppe_146	7	14	0.00000000510427
Prunus persica	scaffold_4	17	CH_ppe_291	4	4	0.0000148716
Ricinus communis	29818	17	CH_rco_96	5	6	0.000000183303
Solanum lycopersicum	ch01	17	CH_sly_385	4	4	0.000239618
Solanum lycopersicum	ch03	17	CH_sly_90	7	7	0.000000000175508
Solanum lycopersicum	ch05	17	CH_sly_91	7	7	0.000000000175508
Vitis vinifera	chr10	17	CH_vvi_276	4	4	0.0000180015
Vitis vinifera	chr11	17	CH_vvi_262	5	9	0.0000111983
Vitis vinifera	chr12	17	CH_vvi_170	5	5	0.0000000903807
Vitis vinifera	chr16	17	CH_vvi_322	4	5	0.0000896426
Vitis vinifera	chr4	17	CH_vvi_198	5	6	0.000000540012
Vitis vinifera	chr8	17	CH_vvi_60	11	24	0.00000000000000290506
Vitis vinifera	chr8	18	CH_vvi_43	11	24	0.00000000000000290506
Zea mays	7	17	CH_zma_65	5	5	0.0000000381365

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V