Functional clusters
Information
- Type
- Mapman term
- Identifier
- 34.7
- Description
- transport.phosphate
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_8 | 17 | CH_aly_13 | 4 | 4 | 0.00000000137433 |
Arabidopsis thaliana | 2 | 17 | CH_ath_259 | 3 | 3 | 0.0000194179 |
Arabidopsis thaliana | 5 | 17 | CH_ath_139 | 4 | 4 | 0.0000000150258 |
Brassica rapa | A05 | 17 | CH_bra_222 | 3 | 3 | 0.000177794 |
Brassica rapa | A06 | 17 | CH_bra_104 | 4 | 5 | 0.00000141326 |
Brassica rapa | A06 | 17 | CH_bra_266 | 3 | 4 | 0.000710311 |
Brassica rapa | A06 | 17 | CH_bra_221 | 3 | 3 | 0.000177794 |
Brassica rapa | A09 | 17 | CH_bra_220 | 3 | 3 | 0.000177794 |
Brassica rapa | A09 | 17 | CH_bra_20 | 6 | 7 | 0.00000000000478093 |
Brassica rapa | Scaffold000111 | 17 | CH_bra_43 | 5 | 6 | 0.00000000265735 |
Brassica rapa | A09 | 18 | CH_bra_14 | 10 | 117 | 0.000000000254089 |
Capsella rubella | scaffold_5 | 17 | CH_cru_225 | 3 | 3 | 0.0000392792 |
Capsella rubella | scaffold_8 | 17 | CH_cru_56 | 5 | 5 | 0.0000000000432546 |
Chlamydomonas reinhardtii | chromosome_16 | 17 | CH_cre_53 | 3 | 4 | 0.000201684 |
Chlamydomonas reinhardtii | chromosome_2 | 17 | CH_cre_21 | 4 | 5 | 0.000000329842 |
Citrus sinensis | scaffold00003 | 17 | CH_csi_178 | 3 | 4 | 0.000165428 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_427 | 4 | 4 | 0.0000000676703 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_195 | 8 | 25 | 0.0000000000000943076 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_298 | 5 | 6 | 0.00000000045189 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_360 | 5 | 8 | 0.00000000420977 |
Glycine max | Gm20 | 17 | CH_gma_264 | 4 | 9 | 0.0000060753 |
Oryza sativa ssp. japonica | 3 | 17 | CH_osa_270 | 3 | 4 | 0.0000225379 |
Oryza sativa ssp. japonica | 6 | 17 | CH_osa_232 | 3 | 3 | 0.00000563639 |
Populus trichocarpa | Chr05 | 17 | CH_ptr_344 | 3 | 3 | 0.000049629 |
Populus trichocarpa | Chr10 | 17 | CH_ptr_305 | 4 | 10 | 0.0000106264 |
Populus trichocarpa | Chr10 | 17 | CH_ptr_232 | 4 | 6 | 0.00000076154 |
Prunus persica | scaffold_1 | 17 | CH_ppe_166 | 4 | 4 | 0.0000000230106 |
Solanum lycopersicum | ch02 | 17 | CH_sly_135 | 4 | 4 | 0.0000000117347 |
Vitis vinifera | chr1 | 17 | CH_vvi_176 | 4 | 5 | 0.000000135068 |
Vitis vinifera | chr5 | 17 | CH_vvi_289 | 3 | 3 | 0.0000284314 |
Zea mays | 2 | 17 | CH_zma_69 | 4 | 5 | 0.0000000522642 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |