PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.2
Description: transport.sugars

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_98	3	4	0.000592543
Arabidopsis thaliana	1	17	CH_ath_231	4	5	0.00000474406
Arabidopsis thaliana	3	17	CH_ath_230	4	5	0.00000474406
Capsella rubella	scaffold_3	17	CH_cru_289	3	3	0.000478341
Capsella rubella	scaffold_6	17	CH_cru_290	3	3	0.000478341
Citrus sinensis	scaffold00001	17	CH_csi_216	3	3	0.000400885
Citrus sinensis	scaffold00224	17	CH_csi_83	4	4	0.00000110017
Citrus sinensis	scaffold00407	17	CH_csi_171	4	9	0.000137099
Eucalyptus grandis	scaffold_11	17	CH_egr_206	7	7	0.000000000000270103
Eucalyptus grandis	scaffold_2	17	CH_egr_48	13	14	5.9846e-27
Eucalyptus grandis	scaffold_4	17	CH_egr_589	4	4	0.00000605129
Eucalyptus grandis	scaffold_5	17	CH_egr_657	4	5	0.000030169
Eucalyptus grandis	scaffold_8	17	CH_egr_590	4	4	0.00000605129
Eucalyptus grandis	scaffold_8	17	CH_egr_425	8	40	0.0000000656096
Eucalyptus grandis	scaffold_8	17	CH_egr_717	4	6	0.0000902453
Eucalyptus grandis	scaffold_9	17	CH_egr_588	4	4	0.00000605129
Eucalyptus grandis	scaffold_2	18	CH_egr_46	13	14	5.9846e-27
Eucalyptus grandis	scaffold_8	18	CH_egr_265	11	283	0.000311797
Glycine max	Gm11	17	CH_gma_95	6	7	0.000000000242713
Glycine max	Gm20	17	CH_gma_304	4	5	0.0000205852
Gossypium raimondii	Chr02	17	CH_gra_198	4	4	0.00000319594
Gossypium raimondii	Chr07	17	CH_gra_39	9	11	3.72443e-17
Malus domestica	12	17	CH_mdo_8	10	25	3.70969e-16
Malus domestica	13	17	CH_mdo_215	4	9	0.000144476
Malus domestica	9	17	CH_mdo_72	5	7	0.0000000536365
Malus domestica	12	18	CH_mdo_6	10	25	3.70969e-16
Manihot esculenta	scaffold03614	17	CH_mes_32	6	6	0.0000000000459776
Manihot esculenta	scaffold04285	17	CH_mes_114	4	4	0.00000373007
Oryza sativa ssp. japonica	2	17	CH_osa_168	5	10	0.000000271053
Oryza sativa ssp. japonica	4	17	CH_osa_112	5	6	0.00000000649202
Oryza sativa ssp. japonica	7	17	CH_osa_394	4	13	0.000431063
Populus trichocarpa	Chr07	17	CH_ptr_492	3	3	0.000949786
Populus trichocarpa	Chr08	17	CH_ptr_310	4	5	0.000013381
Prunus persica	scaffold_1	17	CH_ppe_52	8	9	6.02435e-16
Prunus persica	scaffold_2	17	CH_ppe_423	3	3	0.00057018
Prunus persica	scaffold_8	17	CH_ppe_122	9	52	0.000000000557458
Prunus persica	scaffold_1	18	CH_ppe_40	10	24	7.77704e-16
Ricinus communis	29693	17	CH_rco_261	3	3	0.000631831
Ricinus communis	30128	17	CH_rco_71	5	5	0.00000000576202
Ricinus communis	30147	17	CH_rco_131	4	4	0.00000192357
Solanum lycopersicum	ch02	17	CH_sly_250	4	5	0.00000452412
Vitis vinifera	chr14	17	CH_vvi_208	4	4	0.00000107528
Vitis vinifera	chr14	17	CH_vvi_18	13	14	2.50527e-29
Vitis vinifera	chr14	18	CH_vvi_19	13	14	2.50527e-29
Zea mays	2	17	CH_zma_170	4	6	0.0000484005
Zea mays	4	17	CH_zma_95	5	8	0.000000530269
Zea mays	7	17	CH_zma_30	6	6	0.0000000000278279
Zea mays	7	18	CH_zma_27	10	129	0.000000334697

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V