PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.16
Description: transport.ABC transporters and multidrug resistance systems

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_8	6	6	0.0000000000183861
Arabidopsis lyrata	scaffold_8	17	CH_aly_92	4	10	0.000476932
Arabidopsis thaliana	3	17	CH_ath_275	4	5	0.00003472
Arabidopsis thaliana	3	17	CH_ath_237	5	10	0.00000642908
Arabidopsis thaliana	3	17	CH_ath_75	7	7	0.000000000000350118
Arabidopsis thaliana	4	17	CH_ath_238	4	4	0.00000696494
Arabidopsis thaliana	5	17	CH_ath_309	4	6	0.000103847
Brassica rapa	A03	17	CH_bra_188	4	5	0.0000617986
Brassica rapa	A04	17	CH_bra_152	4	4	0.000012401
Brassica rapa	A06	17	CH_bra_151	4	4	0.000012401
Capsella rubella	scaffold_5	17	CH_cru_193	4	4	0.00000858933
Capsella rubella	scaffold_5	17	CH_cru_226	4	5	0.0000428021
Capsella rubella	scaffold_5	17	CH_cru_140	5	6	0.000000213652
Chlamydomonas reinhardtii	chromosome_8	17	CH_cre_55	4	6	0.000279035
Citrus sinensis	scaffold00049	17	CH_csi_125	4	4	0.0000145679
Citrus sinensis	scaffold00080	17	CH_csi_7	10	10	2.59146e-19
Citrus sinensis	scaffold00080	18	CH_csi_5	10	10	2.59146e-19
Eucalyptus grandis	scaffold_1	17	CH_egr_681	4	4	0.0000449223
Eucalyptus grandis	scaffold_10	17	CH_egr_683	4	4	0.0000449223
Eucalyptus grandis	scaffold_11	17	CH_egr_763	4	5	0.000223535
Eucalyptus grandis	scaffold_11	17	CH_egr_210	14	71	0.000000000000332195
Eucalyptus grandis	scaffold_2	17	CH_egr_187	8	8	0.0000000000000547059
Eucalyptus grandis	scaffold_4	17	CH_egr_73	13	16	1.93851e-22
Eucalyptus grandis	scaffold_5	17	CH_egr_682	4	4	0.0000449223
Eucalyptus grandis	scaffold_6	17	CH_egr_334	6	6	0.00000000158319
Eucalyptus grandis	scaffold_7	17	CH_egr_538	5	6	0.00000159608
Eucalyptus grandis	scaffold_8	17	CH_egr_250	8	12	0.0000000000265189
Eucalyptus grandis	scaffold_9	17	CH_egr_155	9	10	0.00000000000000317509
Eucalyptus grandis	scaffold_9	17	CH_egr_481	5	5	0.00000026734
Eucalyptus grandis	scaffold_11	18	CH_egr_143	14	71	0.000000000000332195
Eucalyptus grandis	scaffold_4	18	CH_egr_66	13	16	1.93851e-22
Eucalyptus grandis	scaffold_8	18	CH_egr_247	10	104	0.0000294155
Eucalyptus grandis	scaffold_9	18	CH_egr_221	12	138	0.00000191581
Glycine max	Gm03	17	CH_gma_307	5	9	0.0000252042
Glycine max	Gm03	17	CH_gma_391	4	5	0.000196558
Glycine max	Gm08	17	CH_gma_101	6	6	0.00000000104542
Glycine max	Gm13	17	CH_gma_390	4	5	0.000196558
Glycine max	Gm13	17	CH_gma_323	4	4	0.0000394751
Glycine max	Gm13	17	CH_gma_123	7	13	0.00000000893821
Glycine max	Gm17	17	CH_gma_324	4	4	0.0000394751
Glycine max	Gm19	17	CH_gma_121	6	7	0.00000000728571
Gossypium raimondii	Chr05	17	CH_gra_123	6	9	0.0000000347235
Gossypium raimondii	Chr07	17	CH_gra_234	4	4	0.0000191187
Gossypium raimondii	Chr08	17	CH_gra_235	4	4	0.0000191187
Gossypium raimondii	Chr11	17	CH_gra_233	4	4	0.0000191187
Malus domestica	13	18	CH_mdo_25	10	182	0.0000253574
Manihot esculenta	scaffold07087	17	CH_mes_214	4	7	0.000502996
Manihot esculenta	scaffold08446	17	CH_mes_134	4	4	0.0000145478
Oryza sativa ssp. japonica	1	17	CH_osa_301	4	6	0.0000477175
Oryza sativa ssp. japonica	9	17	CH_osa_303	5	17	0.0000520732
Populus trichocarpa	Chr01	17	CH_ptr_332	4	4	0.0000336612
Populus trichocarpa	Chr01	17	CH_ptr_331	4	4	0.0000336612
Populus trichocarpa	Chr06	17	CH_ptr_378	4	5	0.000167585
Populus trichocarpa	Chr08	17	CH_ptr_379	4	5	0.000167585
Populus trichocarpa	Chr14	17	CH_ptr_238	5	6	0.00000107038
Prunus persica	scaffold_1	17	CH_ppe_294	4	4	0.000017228
Prunus persica	scaffold_1	17	CH_ppe_187	6	10	0.0000000848784
Prunus persica	scaffold_3	17	CH_ppe_295	4	4	0.000017228
Prunus persica	scaffold_6	17	CH_ppe_286	5	9	0.0000104685
Prunus persica	scaffold_8	17	CH_ppe_158	6	8	0.0000000114122
Ricinus communis	29588	17	CH_rco_50	6	6	0.000000000350643
Ricinus communis	29889	17	CH_rco_160	4	4	0.0000141139
Ricinus communis	29912	17	CH_rco_51	6	6	0.000000000350643
Ricinus communis	30076	17	CH_rco_159	4	4	0.0000141139
Ricinus communis	30146	17	CH_rco_158	4	4	0.0000141139
Solanum lycopersicum	ch03	17	CH_sly_361	4	5	0.000143824
Solanum lycopersicum	ch05	17	CH_sly_362	4	5	0.000143824
Solanum lycopersicum	ch06	17	CH_sly_176	5	5	0.000000153076
Solanum lycopersicum	ch12	17	CH_sly_177	5	5	0.000000153076
Vitis vinifera	chr10	17	CH_vvi_149	6	7	0.0000000248369
Vitis vinifera	chr13	17	CH_vvi_260	5	7	0.0000104706
Vitis vinifera	chr13	17	CH_vvi_384	4	5	0.000352664
Vitis vinifera	chr19	17	CH_vvi_111	7	8	0.000000000199731
Vitis vinifera	chr4	17	CH_vvi_383	4	5	0.000352664
Vitis vinifera	chr6	17	CH_vvi_309	4	4	0.0000709392
Vitis vinifera	chr9	17	CH_vvi_188	6	9	0.000000294436
Vitis vinifera	chr9	17	CH_vvi_8	19	21	5.00601e-35
Vitis vinifera	chr6	18	CH_vvi_116	10	129	0.000983528
Vitis vinifera	chr9	18	CH_vvi_8	19	21	5.00601e-35
Zea mays	2	17	CH_zma_237	5	19	0.000372831

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V