Functional clusters
Information
- Type
- Mapman term
- Identifier
- 33.99
- Description
- development.unspecified
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 1 | 17 | CH_ath_260 | 6 | 7 | 0.0000201311 |
Arabidopsis thaliana | 1 | 17 | CH_ath_387 | 5 | 6 | 0.000822727 |
Arabidopsis thaliana | 3 | 17 | CH_ath_303 | 6 | 8 | 0.0000790764 |
Brassica rapa | A10 | 17 | CH_bra_28 | 10 | 13 | 0.000000000343627 |
Brassica rapa | A10 | 18 | CH_bra_15 | 10 | 13 | 0.000000000343627 |
Capsella rubella | scaffold_1 | 17 | CH_cru_244 | 5 | 5 | 0.000127643 |
Capsella rubella | scaffold_2 | 17 | CH_cru_8 | 19 | 21 | 1.08585e-25 |
Capsella rubella | scaffold_5 | 17 | CH_cru_235 | 6 | 8 | 0.0000745025 |
Capsella rubella | scaffold_7 | 17 | CH_cru_236 | 6 | 8 | 0.0000745025 |
Capsella rubella | scaffold_7 | 17 | CH_cru_308 | 5 | 6 | 0.000752016 |
Capsella rubella | scaffold_2 | 18 | CH_cru_8 | 19 | 21 | 1.08585e-25 |
Citrus sinensis | scaffold00001 | 17 | CH_csi_155 | 6 | 9 | 0.0000859029 |
Citrus sinensis | scaffold00028 | 17 | CH_csi_52 | 8 | 10 | 0.0000000181686 |
Citrus sinensis | scaffold00042 | 17 | CH_csi_55 | 7 | 7 | 0.0000000212505 |
Citrus sinensis | scaffold00048 | 17 | CH_csi_134 | 6 | 8 | 0.0000291285 |
Citrus sinensis | scaffold00028 | 18 | CH_csi_17 | 10 | 30 | 0.00000337098 |
Eucalyptus grandis | scaffold_1 | 17 | CH_egr_348 | 8 | 9 | 0.00000000250462 |
Eucalyptus grandis | scaffold_1 | 17 | CH_egr_597 | 6 | 7 | 0.00000652492 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_288 | 9 | 11 | 0.000000000259736 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_129 | 14 | 18 | 2.07624e-17 |
Eucalyptus grandis | scaffold_11 | 17 | CH_egr_199 | 12 | 17 | 0.000000000000141215 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_520 | 10 | 28 | 0.000000828716 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_676 | 13 | 79 | 0.0000388557 |
Eucalyptus grandis | scaffold_4 | 17 | CH_egr_691 | 5 | 5 | 0.00005461 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_777 | 5 | 6 | 0.000322919 |
Eucalyptus grandis | scaffold_7 | 17 | CH_egr_125 | 17 | 32 | 1.58808e-17 |
Eucalyptus grandis | scaffold_7 | 17 | CH_egr_778 | 5 | 6 | 0.000322919 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_596 | 6 | 7 | 0.00000652492 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_776 | 5 | 6 | 0.000322919 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_297 | 13 | 35 | 0.000000000439251 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_621 | 7 | 13 | 0.0000120109 |
Eucalyptus grandis | scaffold_10 | 18 | CH_egr_104 | 14 | 18 | 2.07624e-17 |
Eucalyptus grandis | scaffold_11 | 18 | CH_egr_138 | 12 | 17 | 0.000000000000141215 |
Eucalyptus grandis | scaffold_2 | 18 | CH_egr_214 | 10 | 28 | 0.000000828716 |
Eucalyptus grandis | scaffold_3 | 18 | CH_egr_250 | 13 | 79 | 0.0000388557 |
Eucalyptus grandis | scaffold_7 | 18 | CH_egr_102 | 17 | 32 | 1.58808e-17 |
Eucalyptus grandis | scaffold_9 | 18 | CH_egr_244 | 10 | 38 | 0.0000255066 |
Eucalyptus grandis | scaffold_9 | 18 | CH_egr_168 | 13 | 35 | 0.000000000439251 |
Glycine max | Gm04 | 17 | CH_gma_150 | 7 | 7 | 0.0000000486753 |
Glycine max | Gm05 | 17 | CH_gma_341 | 6 | 8 | 0.0000695189 |
Glycine max | Gm06 | 17 | CH_gma_151 | 7 | 7 | 0.0000000486753 |
Glycine max | Gm08 | 17 | CH_gma_190 | 8 | 12 | 0.000000426673 |
Glycine max | Gm08 | 18 | CH_gma_73 | 10 | 39 | 0.000127152 |
Gossypium raimondii | Chr08 | 17 | CH_gra_264 | 5 | 5 | 0.0000951477 |
Gossypium raimondii | Chr09 | 17 | CH_gra_184 | 6 | 6 | 0.00000181103 |
Malus domestica | 1 | 17 | CH_mdo_39 | 10 | 21 | 0.00000000110349 |
Malus domestica | 7 | 17 | CH_mdo_110 | 7 | 12 | 0.00000144156 |
Malus domestica | 1 | 18 | CH_mdo_12 | 10 | 21 | 0.00000000110349 |
Manihot esculenta | scaffold01701 | 17 | CH_mes_149 | 6 | 8 | 0.000052463 |
Oryza sativa ssp. japonica | 3 | 17 | CH_osa_324 | 6 | 10 | 0.00010469 |
Oryza sativa ssp. japonica | 9 | 17 | CH_osa_291 | 5 | 5 | 0.0000361893 |
Populus trichocarpa | Chr02 | 17 | CH_ptr_398 | 7 | 13 | 0.000241261 |
Populus trichocarpa | Chr06 | 17 | CH_ptr_407 | 5 | 5 | 0.000289352 |
Populus trichocarpa | Chr14 | 17 | CH_ptr_406 | 5 | 5 | 0.000289352 |
Populus trichocarpa | Chr14 | 17 | CH_ptr_329 | 11 | 38 | 0.0000319653 |
Populus trichocarpa | Chr17 | 17 | CH_ptr_439 | 7 | 14 | 0.00047264 |
Populus trichocarpa | Chr14 | 18 | CH_ptr_100 | 11 | 38 | 0.0000319653 |
Prunus persica | scaffold_1 | 17 | CH_ppe_318 | 5 | 5 | 0.0000434581 |
Prunus persica | scaffold_1 | 17 | CH_ppe_155 | 8 | 10 | 0.00000000964192 |
Prunus persica | scaffold_1 | 17 | CH_ppe_317 | 5 | 5 | 0.0000434581 |
Prunus persica | scaffold_2 | 17 | CH_ppe_43 | 20 | 55 | 3.52382e-17 |
Prunus persica | scaffold_2 | 17 | CH_ppe_137 | 9 | 13 | 0.00000000254241 |
Prunus persica | scaffold_4 | 17 | CH_ppe_89 | 9 | 9 | 0.00000000000378376 |
Prunus persica | scaffold_2 | 18 | CH_ppe_80 | 10 | 25 | 0.000000167137 |
Prunus persica | scaffold_2 | 18 | CH_ppe_35 | 20 | 55 | 3.52382e-17 |
Prunus persica | scaffold_4 | 18 | CH_ppe_50 | 10 | 12 | 0.00000000000413603 |
Ricinus communis | 29168 | 17 | CH_rco_237 | 5 | 7 | 0.000523808 |
Ricinus communis | 29822 | 17 | CH_rco_169 | 5 | 5 | 0.0000256439 |
Ricinus communis | 30076 | 17 | CH_rco_101 | 9 | 20 | 0.000000263454 |
Ricinus communis | 30147 | 17 | CH_rco_236 | 5 | 7 | 0.000523808 |
Ricinus communis | 30076 | 18 | CH_rco_25 | 10 | 51 | 0.000208378 |
Solanum lycopersicum | ch01 | 17 | CH_sly_355 | 5 | 5 | 0.000123206 |
Solanum lycopersicum | ch03 | 17 | CH_sly_154 | 8 | 10 | 0.0000000447506 |
Solanum lycopersicum | ch05 | 17 | CH_sly_354 | 5 | 5 | 0.000123206 |
Solanum lycopersicum | ch03 | 18 | CH_sly_93 | 13 | 82 | 0.000421171 |
Vitis vinifera | chr1 | 17 | CH_vvi_327 | 6 | 10 | 0.000107724 |
Vitis vinifera | chr14 | 17 | CH_vvi_417 | 5 | 7 | 0.000673407 |
Vitis vinifera | chr15 | 17 | CH_vvi_239 | 6 | 7 | 0.00000374724 |
Vitis vinifera | chr15 | 17 | CH_vvi_292 | 5 | 5 | 0.0000329681 |
Vitis vinifera | chr19 | 17 | CH_vvi_354 | 5 | 6 | 0.000195086 |
Vitis vinifera | chr4 | 17 | CH_vvi_51 | 12 | 13 | 1.32292e-16 |
Vitis vinifera | chr4 | 17 | CH_vvi_416 | 5 | 7 | 0.000673407 |
Vitis vinifera | chr4 | 18 | CH_vvi_39 | 12 | 13 | 1.32292e-16 |
Zea mays | 1 | 17 | CH_zma_14 | 12 | 16 | 0.0000000000000115045 |
Zea mays | 1 | 18 | CH_zma_8 | 12 | 16 | 0.0000000000000115045 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |