PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.99
Description: signalling.receptor kinases.misc

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	17	CH_aly_23	4	4	0.00000006211
Arabidopsis lyrata	scaffold_3	17	CH_aly_3	8	16	9.91031e-16
Arabidopsis thaliana	1	17	CH_ath_24	11	14	5.31813e-20
Arabidopsis thaliana	1	17	CH_ath_281	4	5	0.0000483319
Arabidopsis thaliana	3	17	CH_ath_6	18	25	7.23477e-34
Arabidopsis thaliana	4	17	CH_ath_10	14	14	8.17006e-30
Arabidopsis thaliana	1	18	CH_ath_26	11	14	5.31813e-20
Arabidopsis thaliana	3	18	CH_ath_17	18	25	7.23477e-34
Arabidopsis thaliana	4	18	CH_ath_21	14	14	8.17006e-30
Brassica rapa	A02	17	CH_bra_285	3	3	0.000823243
Brassica rapa	A02	17	CH_bra_24	6	7	0.000000000108372
Brassica rapa	A03	17	CH_bra_286	3	3	0.000823243
Brassica rapa	A05	17	CH_bra_25	6	7	0.000000000108372
Brassica rapa	A05	17	CH_bra_68	5	6	0.000000035233
Brassica rapa	A06	17	CH_bra_116	4	4	0.00000221137
Brassica rapa	A10	17	CH_bra_117	4	4	0.00000221137
Capsella rubella	scaffold_1	17	CH_cru_42	8	11	0.000000000000216649
Capsella rubella	scaffold_2	17	CH_cru_63	6	6	0.000000000093823
Capsella rubella	scaffold_3	17	CH_cru_2	23	24	3.43234e-51
Capsella rubella	scaffold_4	17	CH_cru_64	6	6	0.000000000093823
Capsella rubella	scaffold_5	17	CH_cru_35	9	14	0.00000000000000966818
Capsella rubella	scaffold_3	18	CH_cru_2	23	24	3.43234e-51
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_69	2	2	0.000682555
Citrus sinensis	scaffold00064	17	CH_csi_184	3	3	0.000252414
Citrus sinensis	scaffold00136	17	CH_csi_13	7	8	0.0000000000000514064
Eucalyptus grandis	scaffold_1	17	CH_egr_188	7	7	0.0000000000000633851
Eucalyptus grandis	scaffold_10	17	CH_egr_93	14	46	1.57259e-20
Eucalyptus grandis	scaffold_10	17	CH_egr_312	8	29	0.000000000726442
Eucalyptus grandis	scaffold_10	18	CH_egr_52	22	178	5.72682e-25
Glycine max	Gm08	17	CH_gma_24	10	15	4.85645e-20
Glycine max	Gm12	17	CH_gma_413	3	3	0.000333624
Glycine max	Gm13	17	CH_gma_197	4	4	0.00000060012
Glycine max	Gm15	17	CH_gma_44	7	7	0.00000000000000328125
Glycine max	Gm08	18	CH_gma_23	10	15	4.85645e-20
Gossypium raimondii	Chr11	17	CH_gra_169	4	5	0.00000078744
Malus domestica	5	17	CH_mdo_264	3	4	0.000335076
Manihot esculenta	scaffold12525	17	CH_mes_70	5	10	0.000000132868
Oryza sativa ssp. japonica	1	17	CH_osa_368	4	4	0.000216708
Oryza sativa ssp. japonica	1	17	CH_osa_273	7	23	0.0000228703
Oryza sativa ssp. japonica	11	17	CH_osa_31	12	18	5.21236e-17
Oryza sativa ssp. japonica	11	17	CH_osa_38	13	33	0.0000000000000112155
Oryza sativa ssp. japonica	5	17	CH_osa_58	8	9	0.00000000000725438
Oryza sativa ssp. japonica	6	17	CH_osa_223	10	62	0.00000364683
Oryza sativa ssp. japonica	8	17	CH_osa_55	11	27	0.00000000000441381
Oryza sativa ssp. japonica	9	17	CH_osa_23	19	75	8.62236e-19
Oryza sativa ssp. japonica	9	17	CH_osa_203	5	5	0.0000017011
Oryza sativa ssp. japonica	11	18	CH_osa_25	12	18	5.21236e-17
Oryza sativa ssp. japonica	11	18	CH_osa_29	13	33	0.0000000000000112155
Oryza sativa ssp. japonica	4	18	CH_osa_118	15	277	0.000454812
Oryza sativa ssp. japonica	6	18	CH_osa_75	10	62	0.00000364683
Oryza sativa ssp. japonica	8	18	CH_osa_39	11	27	0.00000000000441381
Oryza sativa ssp. japonica	9	18	CH_osa_11	26	102	4.51765e-27
Populus trichocarpa	Chr07	17	CH_ptr_92	6	6	0.00000000000354489
Populus trichocarpa	Chr13	17	CH_ptr_351	4	8	0.0000579762
Populus trichocarpa	Chr17	17	CH_ptr_181	5	7	0.0000000361977
Populus trichocarpa	Chr19	17	CH_ptr_182	5	7	0.0000000361977
Populus trichocarpa	Chr19	17	CH_ptr_123	7	18	0.000000000223969
Populus trichocarpa	Chr19	18	CH_ptr_69	12	170	0.000000000125082
Prunus persica	scaffold_3	17	CH_ppe_24	11	17	2.32593e-21
Prunus persica	scaffold_3	18	CH_ppe_22	11	17	2.32593e-21
Ricinus communis	30146	17	CH_rco_7	10	11	9.74274e-23
Ricinus communis	30146	18	CH_rco_7	10	11	9.74274e-23
Vitis vinifera	chr9	17	CH_vvi_5	19	34	1.13309e-39
Vitis vinifera	chr9	18	CH_vvi_5	19	34	1.13309e-39
Zea mays	7	17	CH_zma_253	3	4	0.00049282

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V