PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.24
Description: signalling.receptor kinases.S-locus glycoprotein like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_27	4	9	0.000000129674
Arabidopsis lyrata	scaffold_2	17	CH_aly_6	6	22	0.00000000000839567
Arabidopsis thaliana	1	17	CH_ath_13	11	21	2.64417e-25
Arabidopsis thaliana	1	17	CH_ath_261	4	15	0.0000203696
Arabidopsis thaliana	1	18	CH_ath_25	11	21	2.64417e-25
Brassica rapa	A01	17	CH_bra_295	3	6	0.000913929
Brassica rapa	A08	17	CH_bra_294	3	6	0.000913929
Brassica rapa	A09	17	CH_bra_181	3	3	0.0000458023
Brassica rapa	A09	17	CH_bra_27	5	6	0.000000000264996
Capsella rubella	scaffold_1	17	CH_cru_156	4	8	0.00000139208
Capsella rubella	scaffold_2	17	CH_cru_12	9	16	5.81577e-20
Capsella rubella	scaffold_2	18	CH_cru_17	10	63	4.10358e-16
Eucalyptus grandis	scaffold_1	17	CH_egr_153	9	14	0.00000000000000197587
Eucalyptus grandis	scaffold_6	17	CH_egr_258	7	11	0.0000000000354701
Eucalyptus grandis	scaffold_6	17	CH_egr_565	4	4	0.00000362081
Malus domestica	7	17	CH_mdo_100	4	5	0.000000718639
Malus domestica	9	17	CH_mdo_66	7	51	0.0000000324665
Manihot esculenta	scaffold05116	17	CH_mes_5	9	11	2.68795e-22
Oryza sativa ssp. japonica	1	17	CH_osa_293	4	4	0.0000366571
Oryza sativa ssp. japonica	1	17	CH_osa_272	5	9	0.0000227921
Oryza sativa ssp. japonica	1	17	CH_osa_3	28	51	1.54211e-46
Oryza sativa ssp. japonica	4	17	CH_osa_17	13	23	7.10592e-20
Oryza sativa ssp. japonica	4	17	CH_osa_29	11	17	3.28163e-17
Oryza sativa ssp. japonica	4	17	CH_osa_91	6	6	0.000000000919794
Oryza sativa ssp. japonica	7	17	CH_osa_5	24	54	2.30627e-36
Oryza sativa ssp. japonica	9	17	CH_osa_63	8	13	0.000000000028641
Oryza sativa ssp. japonica	1	18	CH_osa_3	28	51	1.54211e-46
Oryza sativa ssp. japonica	4	18	CH_osa_19	13	23	7.10592e-20
Oryza sativa ssp. japonica	4	18	CH_osa_24	11	17	3.28163e-17
Oryza sativa ssp. japonica	7	18	CH_osa_5	27	81	3.41338e-37
Populus trichocarpa	Chr10	17	CH_ptr_13	19	50	8.22839e-33
Populus trichocarpa	Chr11	17	CH_ptr_4	23	54	4.83269e-42
Populus trichocarpa	Chr11	17	CH_ptr_79	7	8	0.00000000000016864
Populus trichocarpa	Chr10	18	CH_ptr_11	19	50	8.22839e-33
Prunus persica	scaffold_4	17	CH_ppe_65	6	6	0.0000000000000853312
Ricinus communis	30014	17	CH_rco_29	6	8	0.00000000000422819
Zea mays	10	17	CH_zma_112	4	10	0.00000218909

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V