PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2
Description: signalling.receptor kinases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_74	13	24	0.000000000000309201
Arabidopsis thaliana	4	17	CH_ath_189	6	6	0.000000575757
Arabidopsis thaliana	3	18	CH_ath_38	13	24	0.000000000000309201
Brassica rapa	A05	17	CH_bra_47	12	29	0.0000000048926
Brassica rapa	A05	18	CH_bra_17	12	29	0.0000000048926
Brassica rapa	A06	18	CH_bra_25	10	25	0.000000846257
Capsella rubella	scaffold_5	18	CH_cru_26	17	59	0.000000000130676
Chlamydomonas reinhardtii	chromosome_17	17	CH_cre_13	5	7	0.00000000312599
Citrus sinensis	scaffold00033	17	CH_csi_47	8	8	0.000000011018
Citrus sinensis	scaffold00071	17	CH_csi_217	5	5	0.000416997
Citrus sinensis	scaffold00083	17	CH_csi_193	6	8	0.000330824
Citrus sinensis	scaffold00096	17	CH_csi_23	10	10	0.00000000000968146
Citrus sinensis	scaffold00012	18	CH_csi_1	42	51	1.00182e-51
Citrus sinensis	scaffold00096	18	CH_csi_8	10	10	0.00000000000968146
Eucalyptus grandis	scaffold_2	17	CH_egr_56	28	35	2.00859e-24
Eucalyptus grandis	scaffold_6	17	CH_egr_88	22	24	3.37204e-21
Eucalyptus grandis	scaffold_6	17	CH_egr_144	18	20	2.2653e-16
Eucalyptus grandis	scaffold_6	17	CH_egr_139	20	25	1.71884e-16
Eucalyptus grandis	scaffold_2	18	CH_egr_212	11	15	0.000000774634
Eucalyptus grandis	scaffold_2	18	CH_egr_54	28	35	2.00859e-24
Eucalyptus grandis	scaffold_3	18	CH_egr_18	42	60	4.62941e-34
Eucalyptus grandis	scaffold_6	18	CH_egr_79	22	24	3.37204e-21
Eucalyptus grandis	scaffold_6	18	CH_egr_192	10	10	0.0000000123634
Eucalyptus grandis	scaffold_6	18	CH_egr_112	20	25	1.71884e-16
Eucalyptus grandis	scaffold_6	18	CH_egr_201	50	291	0.0000000998761
Glycine max	Gm01	17	CH_gma_198	12	33	0.000000612667
Glycine max	Gm03	17	CH_gma_379	11	40	0.000135624
Glycine max	Gm07	17	CH_gma_35	15	18	3.1581e-17
Glycine max	Gm09	17	CH_gma_493	6	10	0.000980155
Glycine max	Gm10	17	CH_gma_448	5	5	0.000503332
Glycine max	Gm12	17	CH_gma_415	6	8	0.000333786
Glycine max	Gm01	18	CH_gma_57	12	33	0.000000612667
Glycine max	Gm03	18	CH_gma_74	11	40	0.000135624
Glycine max	Gm07	18	CH_gma_26	15	18	3.1581e-17
Gossypium raimondii	Chr02	17	CH_gra_11	22	23	1.64341e-29
Gossypium raimondii	Chr02	17	CH_gra_34	24	56	9.67426e-19
Gossypium raimondii	Chr07	17	CH_gra_5	29	35	8.36066e-36
Gossypium raimondii	Chr07	17	CH_gra_116	10	16	0.0000000176333
Gossypium raimondii	Chr11	17	CH_gra_96	12	19	0.000000000196696
Gossypium raimondii	Chr02	18	CH_gra_5	63	203	3.044e-44
Gossypium raimondii	Chr05	18	CH_gra_57	10	17	0.000000108768
Gossypium raimondii	Chr07	18	CH_gra_2	57	135	1.35224e-48
Gossypium raimondii	Chr07	18	CH_gra_54	10	16	0.0000000176333
Gossypium raimondii	Chr11	18	CH_gra_48	12	19	0.000000000196696
Malus domestica	11	18	CH_mdo_19	18	110	0.00000109571
Malus domestica	5	18	CH_mdo_14	28	232	0.00000000937351
Malus domestica	9	18	CH_mdo_20	13	55	0.00000523016
Manihot esculenta	scaffold08617	17	CH_mes_105	8	14	0.00000276243
Oryza sativa ssp. japonica	1	17	CH_osa_186	10	15	0.00000082031
Oryza sativa ssp. japonica	11	17	CH_osa_166	18	60	0.0000002615
Oryza sativa ssp. japonica	4	17	CH_osa_82	19	49	0.000000000307068
Oryza sativa ssp. japonica	11	18	CH_osa_53	23	95	0.0000000448829
Oryza sativa ssp. japonica	4	18	CH_osa_45	19	49	0.000000000307068
Populus trichocarpa	Chr01	17	CH_ptr_55	13	13	0.00000000000000134249
Populus trichocarpa	Chr03	17	CH_ptr_253	14	44	0.00000198938
Populus trichocarpa	Chr11	17	CH_ptr_58	14	16	0.00000000000000479451
Populus trichocarpa	Chr17	17	CH_ptr_167	9	10	0.0000000129834
Populus trichocarpa	Chr19	17	CH_ptr_51	23	53	3.21036e-16
Populus trichocarpa	scaffold_24	17	CH_ptr_20	22	25	8.60567e-26
Populus trichocarpa	scaffold_67	17	CH_ptr_145	10	12	0.00000000263695
Populus trichocarpa	Chr01	18	CH_ptr_47	13	13	0.00000000000000134249
Populus trichocarpa	Chr03	18	CH_ptr_87	14	44	0.00000198938
Populus trichocarpa	Chr07	18	CH_ptr_77	10	13	0.0000000110977
Populus trichocarpa	Chr11	18	CH_ptr_48	14	16	0.00000000000000479451
Populus trichocarpa	Chr11	18	CH_ptr_113	29	267	0.000453604
Populus trichocarpa	Chr11	18	CH_ptr_1	83	120	7.80941e-91
Populus trichocarpa	Chr17	18	CH_ptr_78	11	17	0.0000000139138
Populus trichocarpa	Chr19	18	CH_ptr_105	12	38	0.0000532573
Populus trichocarpa	Chr19	18	CH_ptr_45	23	53	3.21036e-16
Populus trichocarpa	scaffold_24	18	CH_ptr_18	22	25	8.60567e-26
Populus trichocarpa	scaffold_67	18	CH_ptr_74	10	12	0.00000000263695
Prunus persica	scaffold_3	17	CH_ppe_197	10	17	0.000000149076
Prunus persica	scaffold_3	18	CH_ppe_78	10	17	0.000000149076
Prunus persica	scaffold_4	18	CH_ppe_45	42	277	0.0000000000000521184
Prunus persica	scaffold_4	18	CH_ppe_95	31	296	0.0000146699
Prunus persica	scaffold_4	18	CH_ppe_12	49	178	7.75327e-30
Prunus persica	scaffold_4	18	CH_ppe_89	15	60	0.00000257229
Ricinus communis	29933	17	CH_rco_61	8	8	0.00000000118898
Solanum lycopersicum	ch02	17	CH_sly_132	16	68	0.0000000106008
Solanum lycopersicum	ch07	17	CH_sly_455	5	6	0.000643916
Solanum lycopersicum	ch02	18	CH_sly_59	16	68	0.0000000106008
Vitis vinifera	chr10	17	CH_vvi_31	17	18	1.83989e-21
Vitis vinifera	chr16	17	CH_vvi_168	14	41	0.0000000852422
Vitis vinifera	chr19	17	CH_vvi_43	20	34	2.12251e-18
Vitis vinifera	chrUn	17	CH_vvi_263	6	6	0.0000132295
Vitis vinifera	chrUn	17	CH_vvi_296	7	10	0.0000413625
Vitis vinifera	chr10	18	CH_vvi_72	14	42	0.000000124551
Vitis vinifera	chr10	18	CH_vvi_31	17	18	1.83989e-21
Vitis vinifera	chr12	18	CH_vvi_68	10	16	0.0000000559349
Vitis vinifera	chr12	18	CH_vvi_87	31	284	0.00000416789
Vitis vinifera	chr12	18	CH_vvi_73	10	17	0.000000132392
Vitis vinifera	chr16	18	CH_vvi_84	30	250	0.000000786472
Vitis vinifera	chr16	18	CH_vvi_69	14	41	0.0000000852422
Vitis vinifera	chr19	18	CH_vvi_35	20	34	2.12251e-18
Zea mays	3	18	CH_zma_37	10	43	0.0000350268

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V