PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A05	17	CH_bra_180	3	5	0.000042281
Citrus sinensis	scaffold00057	17	CH_csi_60	4	6	0.0000000511857
Citrus sinensis	scaffold00173	17	CH_csi_112	3	3	0.00000584964
Eucalyptus grandis	scaffold_1	17	CH_egr_330	5	13	0.00000000132227
Eucalyptus grandis	scaffold_1	17	CH_egr_516	4	11	0.000000771241
Glycine max	Gm08	17	CH_gma_444	3	8	0.000468172
Gossypium raimondii	Chr07	17	CH_gra_230	4	21	0.0000164493
Malus domestica	14	17	CH_mdo_133	3	3	0.00000566008
Malus domestica	9	17	CH_mdo_165	3	4	0.000022632
Manihot esculenta	scaffold03542	17	CH_mes_15	6	6	0.00000000000000332304
Manihot esculenta	scaffold12794	17	CH_mes_49	4	4	0.00000000800183
Oryza sativa ssp. japonica	1	17	CH_osa_99	4	6	0.00000000207345
Populus trichocarpa	Chr01	17	CH_ptr_276	3	4	0.00000428598
Prunus persica	scaffold_6	17	CH_ppe_144	4	5	0.00000000401654
Ricinus communis	29983	17	CH_rco_285	2	2	0.000981981
Solanum lycopersicum	ch01	17	CH_sly_208	3	3	0.000000820943
Vitis vinifera	chr6	17	CH_vvi_183	4	10	0.000000197881
Zea mays	1	17	CH_zma_131	3	3	0.00000584272
Zea mays	3	17	CH_zma_124	4	15	0.00000379437
Zea mays	5	17	CH_zma_132	3	3	0.00000584272

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V