PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_1	17	CH_egr_227	6	7	0.00000000000133758
Eucalyptus grandis	scaffold_11	17	CH_egr_316	5	6	0.000000000909473
Eucalyptus grandis	scaffold_2	17	CH_egr_716	3	3	0.0000891753
Glycine max	Gm02	17	CH_gma_15	10	11	1.16643e-22
Glycine max	Gm19	17	CH_gma_195	4	4	0.000000508406
Glycine max	Gm02	18	CH_gma_16	10	11	1.16643e-22
Gossypium raimondii	Chr08	17	CH_gra_265	3	3	0.000100996
Oryza sativa ssp. japonica	7	17	CH_osa_278	3	3	0.0000292514
Populus trichocarpa	Chr08	17	CH_ptr_146	5	6	0.00000000270898
Populus trichocarpa	Chr19	17	CH_ptr_248	4	5	0.0000014338
Prunus persica	scaffold_2	17	CH_ppe_431	3	4	0.000688111
Prunus persica	scaffold_3	17	CH_ppe_21	10	11	6.48112e-23
Prunus persica	scaffold_3	18	CH_ppe_19	10	11	6.48112e-23

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V