PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.5
Description: protein.degradation.serine protease

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	17	CH_aly_108	3	3	0.000909483
Arabidopsis lyrata	scaffold_4	17	CH_aly_57	4	6	0.0000407194
Arabidopsis thaliana	1	17	CH_ath_144	5	5	0.0000000195152
Arabidopsis thaliana	2	17	CH_ath_99	6	6	0.0000000000679587
Arabidopsis thaliana	3	17	CH_ath_267	4	5	0.0000277046
Capsella rubella	scaffold_2	17	CH_cru_230	4	5	0.0000644005
Capsella rubella	scaffold_4	17	CH_cru_20	9	9	2.49863e-17
Capsella rubella	scaffold_4	18	CH_cru_33	11	103	0.0000000668259
Chlamydomonas reinhardtii	chromosome_10	17	CH_cre_62	3	3	0.000429023
Chlamydomonas reinhardtii	chromosome_10	19	CH_cre_18	3	3	0.000429023
Eucalyptus grandis	scaffold_1	17	CH_egr_417	6	10	0.0000000499948
Eucalyptus grandis	scaffold_11	17	CH_egr_757	4	6	0.000192479
Eucalyptus grandis	scaffold_7	17	CH_egr_184	8	9	0.0000000000000394215
Eucalyptus grandis	scaffold_7	17	CH_egr_171	14	78	0.0000000000000179791
Eucalyptus grandis	scaffold_8	17	CH_egr_490	5	6	0.000000335183
Eucalyptus grandis	scaffold_9	17	CH_egr_771	6	34	0.00029296
Eucalyptus grandis	scaffold_9	17	CH_egr_75	11	11	3.24064e-22
Eucalyptus grandis	scaffold_7	18	CH_egr_120	15	99	0.0000000000000141918
Eucalyptus grandis	scaffold_9	18	CH_egr_68	11	11	3.24064e-22
Glycine max	Gm03	17	CH_gma_274	4	4	0.00000822265
Glycine max	Gm09	17	CH_gma_327	4	5	0.0000409984
Glycine max	Gm20	17	CH_gma_382	5	17	0.000170423
Malus domestica	15	17	CH_mdo_291	3	3	0.000634354
Malus domestica	8	17	CH_mdo_198	4	8	0.000105769
Manihot esculenta	scaffold06871	17	CH_mes_248	3	3	0.00081628
Oryza sativa ssp. japonica	11	17	CH_osa_204	6	27	0.00000195802
Oryza sativa ssp. japonica	11	17	CH_osa_239	7	62	0.00000660999
Oryza sativa ssp. japonica	3	17	CH_osa_403	3	3	0.000642404
Oryza sativa ssp. japonica	11	18	CH_osa_56	11	207	0.00000011897
Populus trichocarpa	Chr01	17	CH_ptr_111	7	11	0.0000000000526029
Populus trichocarpa	Chr16	17	CH_ptr_126	6	7	0.000000000351742
Prunus persica	scaffold_5	17	CH_ppe_215	5	8	0.000000617576
Prunus persica	scaffold_8	17	CH_ppe_27	10	10	3.37204e-21
Prunus persica	scaffold_8	18	CH_ppe_25	10	10	3.37204e-21
Ricinus communis	29929	17	CH_rco_140	4	4	0.00000426883
Ricinus communis	30099	17	CH_rco_27	7	8	0.00000000000163351
Solanum lycopersicum	ch01	17	CH_sly_139	5	5	0.0000000178314
Solanum lycopersicum	ch04	17	CH_sly_299	4	5	0.0000259437
Solanum lycopersicum	ch04	17	CH_sly_41	12	47	0.00000000000000366669
Solanum lycopersicum	ch06	17	CH_sly_251	4	4	0.00000520316
Solanum lycopersicum	ch10	17	CH_sly_210	5	8	0.000000990011
Solanum lycopersicum	ch12	17	CH_sly_252	4	4	0.00000520316
Solanum lycopersicum	ch04	18	CH_sly_33	12	47	0.00000000000000366669
Vitis vinifera	chr3	17	CH_vvi_72	9	16	0.0000000000000636807
Vitis vinifera	chr8	17	CH_vvi_140	6	9	0.00000000861318
Vitis vinifera	chr3	18	CH_vvi_46	10	27	0.000000000000169229
Zea mays	7	17	CH_zma_152	4	5	0.0000203049

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V