PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_156	4	4	0.0000000640672
Capsella rubella	scaffold_5	17	CH_cru_227	3	3	0.0000433425
Citrus sinensis	scaffold00011	17	CH_csi_2	11	12	7.63853e-27
Citrus sinensis	scaffold00017	17	CH_csi_152	3	3	0.0000747363
Citrus sinensis	scaffold00011	18	CH_csi_2	11	12	7.63853e-27
Eucalyptus grandis	scaffold_2	17	CH_egr_672	3	3	0.0000368126
Eucalyptus grandis	scaffold_8	17	CH_egr_408	4	4	0.0000000356126
Malus domestica	16	17	CH_mdo_199	3	6	0.000113076
Manihot esculenta	scaffold02912	17	CH_mes_35	5	6	0.000000000636015
Oryza sativa ssp. japonica	1	17	CH_osa_35	8	12	0.00000000000000328397
Oryza sativa ssp. japonica	10	17	CH_osa_15	10	13	5.68476e-21
Oryza sativa ssp. japonica	11	17	CH_osa_366	4	11	0.000215681
Oryza sativa ssp. japonica	3	17	CH_osa_156	5	9	0.000000149694
Oryza sativa ssp. japonica	5	17	CH_osa_179	4	4	0.000000660325
Oryza sativa ssp. japonica	7	17	CH_osa_88	6	10	0.000000000447089
Oryza sativa ssp. japonica	10	18	CH_osa_17	10	13	5.68476e-21
Populus trichocarpa	Chr19	17	CH_ptr_66	7	10	0.0000000000000170124
Prunus persica	scaffold_1	17	CH_ppe_355	3	4	0.000126488
Ricinus communis	29844	17	CH_rco_4	11	15	1.53294e-25
Ricinus communis	29844	18	CH_rco_4	11	15	1.53294e-25
Solanum lycopersicum	ch01	17	CH_sly_7	12	13	2.41231e-29
Solanum lycopersicum	ch01	17	CH_sly_358	4	13	0.000128223
Solanum lycopersicum	ch06	17	CH_sly_434	3	4	0.000493083
Solanum lycopersicum	ch08	17	CH_sly_357	3	3	0.00012341
Solanum lycopersicum	ch01	18	CH_sly_7	12	13	2.41231e-29

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V