PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.3
Description: protein.degradation.cysteine protease

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A01	17	CH_bra_284	3	3	0.000823243
Capsella rubella	scaffold_5	17	CH_cru_296	3	3	0.000590061
Chlamydomonas reinhardtii	chromosome_14	17	CH_cre_27	4	5	0.00000299262
Chlamydomonas reinhardtii	chromosome_14	17	CH_cre_22	4	4	0.00000059965
Citrus sinensis	scaffold00007	17	CH_csi_186	3	3	0.000270883
Eucalyptus grandis	scaffold_11	17	CH_egr_669	4	5	0.0000331815
Eucalyptus grandis	scaffold_2	17	CH_egr_305	6	7	0.000000000618743
Eucalyptus grandis	scaffold_3	17	CH_egr_166	8	9	0.0000000000000102605
Eucalyptus grandis	scaffold_4	17	CH_egr_14	18	25	1.16086e-34
Eucalyptus grandis	scaffold_5	17	CH_egr_11	17	19	1.27693e-35
Eucalyptus grandis	scaffold_5	17	CH_egr_668	4	5	0.0000331815
Eucalyptus grandis	scaffold_8	17	CH_egr_379	7	18	0.00000000982758
Eucalyptus grandis	scaffold_8	17	CH_egr_525	7	32	0.000000994392
Eucalyptus grandis	scaffold_4	18	CH_egr_17	18	25	1.16086e-34
Eucalyptus grandis	scaffold_5	18	CH_egr_15	17	19	1.27693e-35
Eucalyptus grandis	scaffold_8	18	CH_egr_197	14	264	0.0000000585024
Glycine max	Gm06	17	CH_gma_5	25	79	1.84441e-40
Glycine max	Gm12	17	CH_gma_29	9	10	4.20057e-18
Glycine max	Gm06	18	CH_gma_7	28	93	4.04459e-45
Glycine max	Gm12	18	CH_gma_24	14	75	2.32499e-17
Gossypium raimondii	Chr09	17	CH_gra_16	13	16	1.43916e-27
Gossypium raimondii	Chr12	17	CH_gra_57	7	7	0.0000000000000191451
Gossypium raimondii	Chr09	18	CH_gra_16	13	16	1.43916e-27
Malus domestica	16	17	CH_mdo_60	6	15	0.0000000144734
Malus domestica	17	17	CH_mdo_67	6	17	0.0000000356684
Malus domestica	2	17	CH_mdo_267	3	3	0.000375464
Manihot esculenta	scaffold04890	17	CH_mes_203	3	3	0.000320627
Manihot esculenta	scaffold10173	17	CH_mes_202	3	3	0.000320627
Oryza sativa ssp. japonica	1	17	CH_osa_194	4	5	0.00000109116
Oryza sativa ssp. japonica	9	17	CH_osa_20	9	12	1.9636e-19
Oryza sativa ssp. japonica	9	18	CH_osa_23	10	24	2.19943e-18
Populus trichocarpa	Chr04	17	CH_ptr_69	7	7	0.0000000000000196599
Populus trichocarpa	Chr07	17	CH_ptr_249	5	11	0.00000160877
Prunus persica	scaffold_4	17	CH_ppe_361	5	27	0.000189431
Prunus persica	scaffold_4	17	CH_ppe_109	8	29	0.000000000123808
Prunus persica	scaffold_4	17	CH_ppe_228	4	4	0.00000103044
Prunus persica	scaffold_5	17	CH_ppe_60	9	20	0.0000000000000110517
Prunus persica	scaffold_4	18	CH_ppe_73	10	139	0.0000000608374
Prunus persica	scaffold_5	18	CH_ppe_77	10	150	0.000000130654
Ricinus communis	29900	17	CH_rco_229	4	14	0.00041676
Solanum lycopersicum	ch02	17	CH_sly_92	8	37	0.000000000204194
Solanum lycopersicum	ch02	17	CH_sly_388	3	3	0.000260682
Solanum lycopersicum	ch03	17	CH_sly_459	4	15	0.000665042
Solanum lycopersicum	ch07	17	CH_sly_386	3	3	0.000260682
Solanum lycopersicum	ch12	17	CH_sly_387	3	3	0.000260682
Vitis vinifera	chr12	17	CH_vvi_124	5	6	0.00000000206245
Vitis vinifera	chr18	17	CH_vvi_341	3	3	0.000131743
Zea mays	2	17	CH_zma_250	5	22	0.000466918
Zea mays	9	17	CH_zma_130	4	4	0.00000551955

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V