PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	17	CH_aly_107	4	28	0.000793872
Arabidopsis thaliana	4	17	CH_ath_250	6	66	0.0000153765
Capsella rubella	scaffold_6	17	CH_cru_50	6	7	0.00000000000733842
Capsella rubella	scaffold_6	17	CH_cru_88	5	6	0.00000000358264
Capsella rubella	scaffold_6	18	CH_cru_23	11	99	0.00000000000139398
Chlamydomonas reinhardtii	chromosome_16	17	CH_cre_35	3	3	0.0000298958
Chlamydomonas reinhardtii	chromosome_8	17	CH_cre_14	4	4	0.0000000323124
Eucalyptus grandis	scaffold_8	17	CH_egr_400	4	4	0.0000000247393
Solanum lycopersicum	ch02	17	CH_sly_28	9	16	1.38343e-18
Solanum lycopersicum	ch11	17	CH_sly_389	3	4	0.000263337

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V