PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	18	CH_ath_97	23	231	0.000937544
Capsella rubella	scaffold_2	17	CH_cru_299	5	5	0.000593108
Capsella rubella	scaffold_3	17	CH_cru_318	9	26	0.000880207
Capsella rubella	scaffold_6	18	CH_cru_39	10	17	0.000000209425
Eucalyptus grandis	scaffold_10	17	CH_egr_276	15	36	0.000000000124224
Eucalyptus grandis	scaffold_6	17	CH_egr_667	8	15	0.0000318747
Eucalyptus grandis	scaffold_1	18	CH_egr_254	11	39	0.0000809881
Eucalyptus grandis	scaffold_10	18	CH_egr_162	15	36	0.000000000124224
Eucalyptus grandis	scaffold_3	18	CH_egr_161	11	15	0.000000000115329
Gossypium raimondii	Chr10	17	CH_gra_151	11	25	0.000000446682
Gossypium raimondii	Chr10	18	CH_gra_59	11	25	0.000000446682
Manihot esculenta	scaffold09151	17	CH_mes_80	8	10	0.000000404688
Oryza sativa ssp. japonica	2	17	CH_osa_318	6	9	0.0000865034
Oryza sativa ssp. japonica	3	17	CH_osa_201	13	63	0.00000158292
Oryza sativa ssp. japonica	3	18	CH_osa_70	13	63	0.00000158292
Populus trichocarpa	Chr01	17	CH_ptr_207	8	9	0.000000110147
Prunus persica	scaffold_5	18	CH_ppe_118	24	251	0.000735351
Prunus persica	scaffold_7	18	CH_ppe_94	25	220	0.0000106493
Ricinus communis	29589	17	CH_rco_189	7	12	0.0000929344
Vitis vinifera	chr14	17	CH_vvi_98	11	13	0.0000000000110442
Vitis vinifera	chr6	17	CH_vvi_205	9	15	0.000000889996
Vitis vinifera	chr14	18	CH_vvi_52	11	13	0.0000000000110442
Zea mays	4	17	CH_zma_178	6	7	0.0000575901
Zea mays	5	17	CH_zma_212	6	8	0.000225555

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V