PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_8	17	CH_cru_82	5	5	0.00000000164733
Eucalyptus grandis	scaffold_8	17	CH_egr_300	9	74	0.000000000471168
Eucalyptus grandis	scaffold_8	17	CH_egr_355	5	6	0.00000000373193
Eucalyptus grandis	scaffold_8	18	CH_egr_119	13	138	0.0000000000000128933
Glycine max	Gm04	17	CH_gma_419	3	3	0.000354256
Glycine max	Gm18	17	CH_gma_279	4	6	0.00000972688
Glycine max	Gm19	17	CH_gma_378	4	10	0.000135376
Prunus persica	scaffold_5	17	CH_ppe_397	3	4	0.000384346
Solanum lycopersicum	ch02	17	CH_sly_199	4	4	0.000000525493
Solanum lycopersicum	ch11	17	CH_sly_230	4	5	0.00000262339
Solanum lycopersicum	ch11	17	CH_sly_393	3	3	0.000272354
Vitis vinifera	chr5	17	CH_vvi_335	3	3	0.000123151
Zea mays	2	17	CH_zma_190	3	3	0.000117067
Zea mays	4	17	CH_zma_191	3	3	0.000117067

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V