Functional clusters
Information
- Type
- Mapman term
- Identifier
- 29.2.1.2.2.34
- Description
- protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Citrus sinensis | scaffold00015 | 17 | CH_csi_224 | 3 | 19 | 0.000691085 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_709 | 3 | 10 | 0.0000741488 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_624 | 3 | 6 | 0.0000123672 |
Gossypium raimondii | Chr12 | 17 | CH_gra_195 | 4 | 15 | 0.00000304487 |
Manihot esculenta | scaffold11341 | 17 | CH_mes_112 | 4 | 14 | 0.00000355632 |
Populus trichocarpa | Chr17 | 17 | CH_ptr_303 | 4 | 24 | 0.00000941991 |
Prunus persica | scaffold_3 | 17 | CH_ppe_424 | 3 | 19 | 0.000632445 |
Prunus persica | scaffold_3 | 19 | CH_ppe_4 | 3 | 19 | 0.000632445 |
Solanum lycopersicum | ch02 | 17 | CH_sly_183 | 4 | 12 | 0.000000202459 |
Solanum lycopersicum | ch02 | 19 | CH_sly_7 | 3 | 12 | 0.000240327 |
Vitis vinifera | chr14 | 17 | CH_vvi_179 | 4 | 14 | 0.000000166215 |
Vitis vinifera | chr14 | 19 | CH_vvi_3 | 3 | 14 | 0.000176555 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |