PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 28.1
Description: DNA.synthesis/chromatin structure

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_47	30	49	5.58522e-16
Arabidopsis thaliana	2	17	CH_ath_60	30	53	0.0000000000000132186
Arabidopsis thaliana	3	17	CH_ath_42	30	47	9.60027e-17
Arabidopsis thaliana	4	17	CH_ath_48	30	49	5.58522e-16
Arabidopsis thaliana	4	17	CH_ath_71	27	45	0.0000000000000969531
Arabidopsis thaliana	4	17	CH_ath_82	30	60	0.00000000000139684
Arabidopsis thaliana	4	17	CH_ath_33	29	41	5.06776e-18
Arabidopsis thaliana	5	17	CH_ath_54	30	51	0.00000000000000286872
Arabidopsis thaliana	2	18	CH_ath_11	120	296	2.39532e-47
Arabidopsis thaliana	4	18	CH_ath_18	75	170	2.25194e-31
Arabidopsis thaliana	5	18	CH_ath_42	73	300	0.00000000000183424
Arabidopsis thaliana	5	18	CH_ath_14	109	300	2.72405e-37
Arabidopsis thaliana	1	19	CH_ath_28	30	49	4.28814e-16
Arabidopsis thaliana	2	19	CH_ath_36	30	53	0.0000000000000101818
Arabidopsis thaliana	4	19	CH_ath_29	30	49	4.28814e-16
Arabidopsis thaliana	4	19	CH_ath_20	29	41	3.90517e-18
Arabidopsis thaliana	4	19	CH_ath_41	27	45	0.0000000000000764922
Arabidopsis thaliana	4	19	CH_ath_45	30	60	0.00000000000108205
Arabidopsis thaliana	5	19	CH_ath_33	30	51	0.00000000000000220608
Arabidopsis thaliana	2	20	CH_ath_10	120	296	8.90086e-48
Arabidopsis thaliana	4	20	CH_ath_16	75	170	1.20417e-31
Arabidopsis thaliana	5	20	CH_ath_21	73	300	0.00000000000108502
Arabidopsis thaliana	5	20	CH_ath_14	109	300	1.13987e-37
Citrus sinensis	scaffold00085	17	CH_csi_25	8	9	0.0000000000253863
Citrus sinensis	scaffold00085	18	CH_csi_10	10	21	0.0000000000972893
Eucalyptus grandis	scaffold_11	17	CH_egr_353	7	9	0.00000000319391
Eucalyptus grandis	scaffold_2	17	CH_egr_138	12	19	1.49388e-16
Eucalyptus grandis	scaffold_6	17	CH_egr_383	6	6	0.0000000110034
Eucalyptus grandis	scaffold_7	17	CH_egr_108	15	30	2.19745e-19
Eucalyptus grandis	scaffold_8	17	CH_egr_413	10	41	0.0000000429944
Eucalyptus grandis	scaffold_2	18	CH_egr_111	12	19	1.49388e-16
Eucalyptus grandis	scaffold_7	18	CH_egr_92	15	30	2.19745e-19
Eucalyptus grandis	scaffold_8	18	CH_egr_193	10	41	0.0000000429944
Populus trichocarpa	Chr04	17	CH_ptr_420	5	8	0.000342636
Populus trichocarpa	Chr17	17	CH_ptr_457	4	4	0.000577081
Solanum lycopersicum	ch06	17	CH_sly_486	4	4	0.000874867
Solanum lycopersicum	ch11	17	CH_sly_487	4	4	0.000874867
Vitis vinifera	chr16	17	CH_vvi_379	4	4	0.000285918
Zea mays	10	17	CH_zma_180	5	7	0.0000689933

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V