PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.67
Description: RNA.regulation of transcription.putative transcription regulator

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_2	17	CH_cru_272	4	5	0.000313333
Prunus persica	scaffold_4	17	CH_ppe_301	4	4	0.0000246658
Solanum lycopersicum	ch01	17	CH_sly_63	9	13	0.00000000000191504
Solanum lycopersicum	ch09	17	CH_sly_450	4	5	0.000580832
Solanum lycopersicum	ch10	17	CH_sly_209	5	5	0.000000881849
Solanum lycopersicum	ch12	17	CH_sly_351	4	4	0.000116875
Solanum lycopersicum	ch01	18	CH_sly_68	10	47	0.0000000821453

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V