PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.27
Description: RNA.regulation of transcription.NAC domain transcription factor family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_7	17	CH_cre_46	2	2	0.000113759
Chlamydomonas reinhardtii	chromosome_7	19	CH_cre_11	2	2	0.000113759
Eucalyptus grandis	scaffold_6	17	CH_egr_205	5	5	0.000000000000266123
Gossypium raimondii	Chr05	17	CH_gra_203	5	77	0.0000052436
Malus domestica	3	17	CH_mdo_227	3	6	0.000209114
Manihot esculenta	scaffold07520	17	CH_mes_130	3	5	0.0000114909
Oryza sativa ssp. japonica	10	17	CH_osa_336	3	4	0.000133233
Populus trichocarpa	Chr06	17	CH_ptr_65	8	26	0.0000000000000146349
Ricinus communis	29657	17	CH_rco_36	6	21	0.0000000000190414
Ricinus communis	29657	19	CH_rco_5	3	9	0.0001019
Solanum lycopersicum	ch02	17	CH_sly_189	5	21	0.000000282367

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V