PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.25
Description: RNA.regulation of transcription.MYB domain transcription factor family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_7	17	CH_cru_177	5	7	0.0000044812
Capsella rubella	scaffold_7	18	CH_cru_44	11	107	0.00000162405
Eucalyptus grandis	scaffold_10	17	CH_egr_202	10	22	0.000000000000241873
Eucalyptus grandis	scaffold_3	17	CH_egr_454	5	5	0.000000124692
Eucalyptus grandis	scaffold_4	17	CH_egr_550	5	7	0.0000025963
Eucalyptus grandis	scaffold_10	18	CH_egr_142	10	22	0.000000000000241873
Glycine max	Gm06	17	CH_gma_122	7	11	0.00000000779076
Gossypium raimondii	Chr13	17	CH_gra_254	4	4	0.0000592438
Populus trichocarpa	Chr17	17	CH_ptr_281	5	5	0.00000463071
Prunus persica	scaffold_1	17	CH_ppe_252	5	8	0.00000360335
Prunus persica	scaffold_7	17	CH_ppe_289	4	4	0.0000140002
Vitis vinifera	chr2	17	CH_vvi_100	7	8	0.0000000000294593
Vitis vinifera	chr4	17	CH_vvi_144	6	8	0.0000000192735
Zea mays	1	17	CH_zma_29	7	8	0.0000000000266916

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V