Functional clusters
Information
- Type
- Mapman term
- Identifier
- 27.3.21
- Description
- RNA.regulation of transcription.GRAS transcription factor family
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Citrus sinensis | scaffold00014 | 17 | CH_csi_71 | 4 | 4 | 0.000000281397 |
Eucalyptus grandis | scaffold_1 | 17 | CH_egr_671 | 4 | 7 | 0.0000368045 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_346 | 5 | 5 | 0.000000002418 |
Eucalyptus grandis | scaffold_11 | 17 | CH_egr_196 | 7 | 8 | 0.0000000000000971071 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_9 | 17 | 21 | 1.02137e-37 |
Eucalyptus grandis | scaffold_7 | 17 | CH_egr_807 | 3 | 3 | 0.0004566 |
Eucalyptus grandis | scaffold_2 | 18 | CH_egr_13 | 17 | 21 | 1.02137e-37 |
Glycine max | Gm11 | 17 | CH_gma_33 | 8 | 8 | 1.44607e-17 |
Glycine max | Gm12 | 17 | CH_gma_212 | 4 | 4 | 0.000000950529 |
Glycine max | Gm13 | 17 | CH_gma_69 | 6 | 6 | 0.00000000000377761 |
Glycine max | Gm15 | 17 | CH_gma_128 | 5 | 6 | 0.0000000114033 |
Gossypium raimondii | Chr03 | 17 | CH_gra_291 | 3 | 3 | 0.000216064 |
Malus domestica | 11 | 17 | CH_mdo_18 | 7 | 15 | 0.00000000000523605 |
Malus domestica | 3 | 17 | CH_mdo_171 | 4 | 9 | 0.0000319436 |
Malus domestica | 3 | 17 | CH_mdo_123 | 4 | 6 | 0.0000038168 |
Malus domestica | 3 | 19 | CH_mdo_3 | 4 | 9 | 0.0000100191 |
Manihot esculenta | scaffold01945 | 17 | CH_mes_68 | 5 | 8 | 0.0000000816952 |
Manihot esculenta | scaffold06916 | 17 | CH_mes_84 | 4 | 4 | 0.000000653483 |
Manihot esculenta | scaffold07991 | 17 | CH_mes_83 | 4 | 4 | 0.000000653483 |
Oryza sativa ssp. japonica | 11 | 17 | CH_osa_115 | 4 | 4 | 0.00000000813693 |
Populus trichocarpa | Chr01 | 17 | CH_ptr_138 | 5 | 5 | 0.00000000194305 |
Populus trichocarpa | Chr09 | 17 | CH_ptr_188 | 5 | 7 | 0.0000000406593 |
Populus trichocarpa | Chr10 | 17 | CH_ptr_164 | 5 | 6 | 0.0000000116376 |
Prunus persica | scaffold_6 | 17 | CH_ppe_33 | 8 | 8 | 4.62327e-19 |
Ricinus communis | 29889 | 17 | CH_rco_111 | 4 | 5 | 0.000000657997 |
Vitis vinifera | chr13 | 17 | CH_vvi_175 | 4 | 4 | 0.000000133712 |
Vitis vinifera | chr6 | 17 | CH_vvi_120 | 5 | 6 | 0.00000000112773 |
Zea mays | 4 | 17 | CH_zma_25 | 6 | 6 | 0.00000000000316669 |
Zea mays | 4 | 18 | CH_zma_15 | 10 | 82 | 0.0000000000862339 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |