Functional clusters   top

Information

Type
Mapman term
Identifier
27.3.21
Description
RNA.regulation of transcription.GRAS transcription factor family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrus sinensisscaffold0001417CH_csi_71440.000000281397
Eucalyptus grandisscaffold_117CH_egr_671470.0000368045
Eucalyptus grandisscaffold_1017CH_egr_346550.000000002418
Eucalyptus grandisscaffold_1117CH_egr_196780.0000000000000971071
Eucalyptus grandisscaffold_217CH_egr_917211.02137e-37
Eucalyptus grandisscaffold_717CH_egr_807330.0004566
Eucalyptus grandisscaffold_218CH_egr_1317211.02137e-37
Glycine maxGm1117CH_gma_33881.44607e-17
Glycine maxGm1217CH_gma_212440.000000950529
Glycine maxGm1317CH_gma_69660.00000000000377761
Glycine maxGm1517CH_gma_128560.0000000114033
Gossypium raimondiiChr0317CH_gra_291330.000216064
Malus domestica1117CH_mdo_187150.00000000000523605
Malus domestica317CH_mdo_171490.0000319436
Malus domestica317CH_mdo_123460.0000038168
Malus domestica319CH_mdo_3490.0000100191
Manihot esculentascaffold0194517CH_mes_68580.0000000816952
Manihot esculentascaffold0691617CH_mes_84440.000000653483
Manihot esculentascaffold0799117CH_mes_83440.000000653483
Oryza sativa ssp. japonica1117CH_osa_115440.00000000813693
Populus trichocarpaChr0117CH_ptr_138550.00000000194305
Populus trichocarpaChr0917CH_ptr_188570.0000000406593
Populus trichocarpaChr1017CH_ptr_164560.0000000116376
Prunus persicascaffold_617CH_ppe_33884.62327e-19
Ricinus communis2988917CH_rco_111450.000000657997
Vitis viniferachr1317CH_vvi_175440.000000133712
Vitis viniferachr617CH_vvi_120560.00000000112773
Zea mays417CH_zma_25660.00000000000316669
Zea mays418CH_zma_1510820.0000000000862339

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V