PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_78	9	18	0.000000000000870786
Arabidopsis thaliana	1	18	CH_ath_53	10	69	0.000000021109
Arabidopsis thaliana	1	19	CH_ath_44	9	18	0.000000000000352562
Arabidopsis thaliana	1	20	CH_ath_23	10	69	0.00000000784582
Capsella rubella	scaffold_3	17	CH_cru_275	4	6	0.000350439
Eucalyptus grandis	scaffold_1	17	CH_egr_579	4	4	0.00000448215
Eucalyptus grandis	scaffold_1	17	CH_egr_428	7	25	0.0000000724466
Eucalyptus grandis	scaffold_2	17	CH_egr_89	10	10	5.17814e-21
Eucalyptus grandis	scaffold_2	18	CH_egr_80	10	10	5.17814e-21
Zea mays	1	17	CH_zma_291	4	8	0.00090632

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V