PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.9
Description: misc.glutathione S transferases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_22	4	4	0.0000000395385
Arabidopsis lyrata	scaffold_4	17	CH_aly_4	7	13	0.0000000000000573128
Arabidopsis thaliana	1	17	CH_ath_315	3	3	0.000139417
Arabidopsis thaliana	1	17	CH_ath_142	5	8	0.0000000182707
Arabidopsis thaliana	1	17	CH_ath_175	4	5	0.000000215764
Arabidopsis thaliana	5	17	CH_ath_316	3	3	0.000139417
Brassica rapa	A06	17	CH_bra_240	3	3	0.000304928
Brassica rapa	A07	17	CH_bra_34	5	5	0.0000000011039
Brassica rapa	A09	17	CH_bra_142	4	6	0.00000873278
Brassica rapa	A10	17	CH_bra_94	4	4	0.000000583979
Capsella rubella	scaffold_1	17	CH_cru_250	3	3	0.000160997
Capsella rubella	scaffold_1	17	CH_cru_142	4	4	0.000000282644
Capsella rubella	scaffold_2	17	CH_cru_76	5	5	0.000000000485439
Citrus sinensis	scaffold00001	17	CH_csi_223	3	4	0.000634705
Citrus sinensis	scaffold00026	17	CH_csi_174	3	3	0.000158922
Citrus sinensis	scaffold00088	17	CH_csi_73	4	4	0.000000315506
Citrus sinensis	scaffold00109	17	CH_csi_66	5	10	0.000000151978
Citrus sinensis	scaffold00303	17	CH_csi_175	3	3	0.000158922
Eucalyptus grandis	scaffold_1	17	CH_egr_256	6	6	0.0000000000352955
Eucalyptus grandis	scaffold_11	17	CH_egr_66	11	13	1.06043e-22
Eucalyptus grandis	scaffold_11	17	CH_egr_509	5	8	0.000000631055
Eucalyptus grandis	scaffold_11	17	CH_egr_146	8	8	3.31297e-16
Eucalyptus grandis	scaffold_2	17	CH_egr_255	6	6	0.0000000000352955
Eucalyptus grandis	scaffold_2	17	CH_egr_641	4	5	0.0000180581
Eucalyptus grandis	scaffold_6	17	CH_egr_87	11	14	3.19919e-21
Eucalyptus grandis	scaffold_8	17	CH_egr_287	6	7	0.00000000024641
Eucalyptus grandis	scaffold_11	18	CH_egr_61	11	13	1.06043e-22
Eucalyptus grandis	scaffold_6	18	CH_egr_78	11	14	3.19919e-21
Glycine max	Gm01	17	CH_gma_423	3	3	0.000354256
Glycine max	Gm05	17	CH_gma_199	4	4	0.000000650372
Glycine max	Gm07	17	CH_gma_13	11	12	4.09967e-25
Glycine max	Gm08	17	CH_gma_422	3	3	0.000354256
Glycine max	Gm08	17	CH_gma_74	6	7	0.0000000000148604
Glycine max	Gm15	17	CH_gma_25	9	11	6.37455e-19
Glycine max	Gm18	17	CH_gma_420	3	3	0.000354256
Glycine max	Gm18	17	CH_gma_421	3	3	0.000354256
Glycine max	Gm07	18	CH_gma_15	11	12	4.09967e-25
Gossypium raimondii	Chr05	17	CH_gra_26	10	13	6.12291e-21
Gossypium raimondii	Chr06	17	CH_gra_298	4	12	0.000274704
Gossypium raimondii	Chr12	17	CH_gra_213	4	6	0.00000840217
Gossypium raimondii	Chr13	17	CH_gra_193	4	5	0.00000280507
Gossypium raimondii	Chr05	18	CH_gra_25	10	13	6.12291e-21
Malus domestica	13	17	CH_mdo_11	7	12	0.000000000000044242
Malus domestica	17	17	CH_mdo_126	4	8	0.00000400543
Malus domestica	3	17	CH_mdo_231	3	4	0.000220933
Manihot esculenta	scaffold02196	17	CH_mes_186	3	3	0.000285027
Manihot esculenta	scaffold06916	17	CH_mes_110	4	5	0.00000326139
Oryza sativa ssp. japonica	1	17	CH_osa_53	9	37	0.000000000000798173
Oryza sativa ssp. japonica	1	17	CH_osa_54	6	6	0.0000000000014915
Oryza sativa ssp. japonica	10	17	CH_osa_2	26	56	2.89662e-53
Oryza sativa ssp. japonica	3	17	CH_osa_216	4	5	0.0000025964
Oryza sativa ssp. japonica	3	17	CH_osa_378	3	3	0.000302243
Oryza sativa ssp. japonica	1	18	CH_osa_54	10	174	0.0000000456504
Oryza sativa ssp. japonica	10	18	CH_osa_2	26	56	2.89662e-53
Populus trichocarpa	Chr01	17	CH_ptr_19	17	65	1.32497e-26
Populus trichocarpa	Chr08	17	CH_ptr_433	3	3	0.000440231
Populus trichocarpa	Chr10	17	CH_ptr_28	10	11	8.67331e-22
Populus trichocarpa	Chr11	17	CH_ptr_153	6	12	0.00000000399448
Populus trichocarpa	Chr11	17	CH_ptr_284	4	5	0.00000477761
Populus trichocarpa	scaffold_36	17	CH_ptr_285	4	5	0.00000477761
Populus trichocarpa	Chr01	18	CH_ptr_17	17	65	1.32497e-26
Populus trichocarpa	Chr10	18	CH_ptr_27	10	11	8.67331e-22
Populus trichocarpa	Chr11	18	CH_ptr_101	10	280	0.0000332884
Prunus persica	scaffold_1	17	CH_ppe_81	8	18	0.00000000000101125
Prunus persica	scaffold_2	17	CH_ppe_398	3	3	0.000390637
Prunus persica	scaffold_4	17	CH_ppe_9	15	17	4.92404e-34
Prunus persica	scaffold_5	17	CH_ppe_95	7	13	0.0000000000181754
Prunus persica	scaffold_8	17	CH_ppe_59	7	7	0.0000000000000107172
Prunus persica	scaffold_4	18	CH_ppe_9	15	17	4.92404e-34
Ricinus communis	29751	17	CH_rco_9	9	9	1.67235e-20
Ricinus communis	29805	17	CH_rco_209	3	3	0.00023455
Ricinus communis	29904	17	CH_rco_134	4	5	0.0000025294
Ricinus communis	30146	17	CH_rco_208	3	3	0.00023455
Ricinus communis	30148	17	CH_rco_58	5	5	0.00000000107006
Ricinus communis	30190	17	CH_rco_207	3	3	0.00023455
Solanum lycopersicum	ch01	17	CH_sly_303	4	7	0.0000299805
Solanum lycopersicum	ch05	17	CH_sly_424	3	3	0.000393451
Solanum lycopersicum	ch07	17	CH_sly_11	10	10	7.12485e-23
Solanum lycopersicum	ch09	17	CH_sly_2	17	17	6.37626e-42
Solanum lycopersicum	ch12	17	CH_sly_425	3	3	0.000393451
Solanum lycopersicum	ch07	18	CH_sly_11	10	10	7.12485e-23
Solanum lycopersicum	ch09	18	CH_sly_2	17	17	6.37626e-42
Vitis vinifera	chr19	17	CH_vvi_29	16	79	1.34294e-21
Vitis vinifera	chr5	17	CH_vvi_428	4	12	0.000739079
Vitis vinifera	chr7	17	CH_vvi_132	5	5	0.00000000404498
Vitis vinifera	chr8	17	CH_vvi_411	3	3	0.000562588
Vitis vinifera	chr19	18	CH_vvi_27	18	85	3.58015e-25
Zea mays	1	17	CH_zma_213	3	3	0.000226273
Zea mays	1	17	CH_zma_91	4	4	0.000000392617
Zea mays	1	17	CH_zma_6	10	11	8.59913e-23
Zea mays	3	17	CH_zma_18	6	6	0.00000000000113126
Zea mays	3	17	CH_zma_62	5	8	0.0000000374371
Zea mays	9	17	CH_zma_92	4	4	0.000000392617
Zea mays	1	18	CH_zma_5	10	11	8.59913e-23

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V