PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 26.4.1
Description: misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_73	3	4	0.00017064
Arabidopsis thaliana	3	17	CH_ath_342	3	4	0.000209836
Arabidopsis thaliana	5	17	CH_ath_381	4	24	0.000603555
Brassica rapa	A04	17	CH_bra_11	7	8	0.0000000000000251792
Brassica rapa	A09	17	CH_bra_229	3	3	0.000282348
Capsella rubella	scaffold_5	17	CH_cru_141	4	4	0.000000282644
Eucalyptus grandis	scaffold_2	17	CH_egr_690	3	3	0.0000509396
Glycine max	Gm03	17	CH_gma_490	3	4	0.000904553
Glycine max	Gm11	17	CH_gma_187	4	4	0.000000356882
Glycine max	Gm16	17	CH_gma_260	4	6	0.0000053397
Gossypium raimondii	Chr10	17	CH_gra_147	4	4	0.000000333178
Gossypium raimondii	Chr11	17	CH_gra_287	3	3	0.000197284
Oryza sativa ssp. japonica	1	17	CH_osa_10	16	54	5.16042e-30
Oryza sativa ssp. japonica	7	17	CH_osa_222	5	22	0.00000360324
Oryza sativa ssp. japonica	1	18	CH_osa_10	16	54	5.16042e-30
Populus trichocarpa	Chr14	17	CH_ptr_16	16	32	4.75234e-31
Populus trichocarpa	Chr14	18	CH_ptr_14	16	32	4.75234e-31
Prunus persica	scaffold_7	17	CH_ppe_353	3	3	0.00012639
Prunus persica	scaffold_7	17	CH_ppe_118	5	5	0.000000000310702
Solanum lycopersicum	ch01	17	CH_sly_491	3	5	0.000914797
Vitis vinifera	chr6	17	CH_vvi_321	3	3	0.0000857455
Vitis vinifera	chr8	17	CH_vvi_96	6	8	0.00000000000614503
Zea mays	3	17	CH_zma_114	4	6	0.00000242332

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V