PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.28
Description: misc.GDSL-motif lipase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_12	6	10	0.000000000947631
Arabidopsis lyrata	scaffold_2	17	CH_aly_34	4	4	0.00000091782
Arabidopsis thaliana	1	17	CH_ath_80	7	9	0.00000000000118926
Arabidopsis thaliana	5	17	CH_ath_266	4	6	0.000027588
Arabidopsis thaliana	5	17	CH_ath_321	6	49	0.000162675
Brassica rapa	A05	17	CH_bra_134	4	4	0.00000670678
Brassica rapa	A06	17	CH_bra_199	4	6	0.000100029
Brassica rapa	A07	17	CH_bra_198	4	6	0.000100029
Brassica rapa	A08	17	CH_bra_41	6	8	0.00000000231213
Brassica rapa	A08	18	CH_bra_18	10	74	0.00000000689147
Capsella rubella	scaffold_1	17	CH_cru_181	4	4	0.0000050217
Capsella rubella	scaffold_1	17	CH_cru_94	6	9	0.00000000543679
Capsella rubella	scaffold_2	17	CH_cru_110	5	5	0.0000000182078
Capsella rubella	scaffold_6	17	CH_cru_95	6	9	0.00000000543679
Capsella rubella	scaffold_8	17	CH_cru_253	4	7	0.000174215
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_49	2	2	0.000113759
Citrus sinensis	scaffold00002	17	CH_csi_232	3	3	0.000736114
Citrus sinensis	scaffold00003	17	CH_csi_231	3	3	0.000736114
Citrus sinensis	scaffold00015	17	CH_csi_230	3	3	0.000736114
Citrus sinensis	scaffold00366	17	CH_csi_45	5	5	0.00000000829777
Eucalyptus grandis	scaffold_3	17	CH_egr_576	4	4	0.00000432892
Eucalyptus grandis	scaffold_4	17	CH_egr_282	9	38	0.000000000226494
Eucalyptus grandis	scaffold_9	17	CH_egr_72	11	12	1.76117e-22
Eucalyptus grandis	scaffold_4	18	CH_egr_195	11	135	0.0000000462184
Eucalyptus grandis	scaffold_9	18	CH_egr_65	11	12	1.76117e-22
Glycine max	Gm03	17	CH_gma_290	4	4	0.0000134987
Glycine max	Gm06	17	CH_gma_443	4	7	0.000467984
Glycine max	Gm07	17	CH_gma_392	4	6	0.000201201
Glycine max	Gm13	17	CH_gma_114	8	25	0.00000000319713
Glycine max	Gm14	17	CH_gma_153	5	5	0.0000000530695
Glycine max	Gm15	17	CH_gma_158	7	20	0.0000000599707
Glycine max	Gm15	17	CH_gma_154	5	5	0.0000000530695
Glycine max	Gm17	17	CH_gma_155	5	5	0.0000000530695
Glycine max	Gm18	17	CH_gma_287	4	4	0.0000134987
Glycine max	Gm19	17	CH_gma_288	4	4	0.0000134987
Glycine max	Gm19	17	CH_gma_289	4	4	0.0000134987
Glycine max	Gm13	18	CH_gma_62	10	108	0.0000012762
Glycine max	Gm15	18	CH_gma_42	12	96	0.000000000313501
Gossypium raimondii	Chr05	17	CH_gra_196	4	4	0.00000308477
Gossypium raimondii	Chr09	17	CH_gra_130	5	6	0.0000000544444
Malus domestica	12	17	CH_mdo_16	6	6	0.00000000000336256
Malus domestica	4	17	CH_mdo_269	3	3	0.000401351
Malus domestica	9	17	CH_mdo_270	4	12	0.000402746
Manihot esculenta	scaffold06582	17	CH_mes_137	4	5	0.0000195878
Oryza sativa ssp. japonica	1	17	CH_osa_103	6	11	0.00000000285799
Oryza sativa ssp. japonica	1	17	CH_osa_19	11	22	1.74855e-19
Oryza sativa ssp. japonica	10	17	CH_osa_266	4	6	0.0000200107
Oryza sativa ssp. japonica	3	17	CH_osa_240	4	5	0.00000668193
Oryza sativa ssp. japonica	5	17	CH_osa_198	4	4	0.00000133873
Oryza sativa ssp. japonica	6	17	CH_osa_300	4	7	0.0000466097
Oryza sativa ssp. japonica	1	18	CH_osa_21	11	22	1.74855e-19
Populus trichocarpa	Chr11	17	CH_ptr_228	5	7	0.000000597805
Populus trichocarpa	Chr17	17	CH_ptr_159	10	70	0.000000005651
Populus trichocarpa	Chr18	17	CH_ptr_50	9	11	2.66278e-16
Populus trichocarpa	Chr19	17	CH_ptr_54	12	39	7.64423e-16
Populus trichocarpa	Chr19	17	CH_ptr_338	4	5	0.0000388652
Populus trichocarpa	Chr17	18	CH_ptr_75	10	70	0.000000005651
Populus trichocarpa	Chr19	18	CH_ptr_46	12	39	7.64423e-16
Prunus persica	scaffold_1	17	CH_ppe_74	8	11	0.000000000000307937
Prunus persica	scaffold_1	17	CH_ppe_272	4	4	0.00000776948
Prunus persica	scaffold_1	17	CH_ppe_273	4	4	0.00000776948
Prunus persica	scaffold_16	17	CH_ppe_154	7	17	0.00000000910053
Prunus persica	scaffold_3	17	CH_ppe_18	12	14	3.56643e-23
Prunus persica	scaffold_4	17	CH_ppe_315	4	5	0.0000387217
Prunus persica	scaffold_4	17	CH_ppe_179	6	11	0.0000000559868
Prunus persica	scaffold_4	17	CH_ppe_108	6	6	0.000000000123267
Prunus persica	scaffold_6	17	CH_ppe_316	4	5	0.0000387217
Prunus persica	scaffold_3	18	CH_ppe_16	12	14	3.56643e-23
Prunus persica	scaffold_4	18	CH_ppe_65	13	147	0.00000000128291
Ricinus communis	29680	17	CH_rco_83	5	5	0.000000019034
Ricinus communis	30026	17	CH_rco_82	5	5	0.000000019034
Solanum lycopersicum	ch01	17	CH_sly_61	7	8	0.000000000000830968
Solanum lycopersicum	ch02	17	CH_sly_86	7	12	0.0000000000813892
Solanum lycopersicum	ch02	17	CH_sly_418	5	23	0.000355504
Solanum lycopersicum	ch04	17	CH_sly_133	5	5	0.0000000110711
Solanum lycopersicum	ch06	17	CH_sly_161	5	6	0.000000066254
Solanum lycopersicum	ch10	17	CH_sly_278	5	13	0.0000139552
Solanum lycopersicum	ch02	18	CH_sly_61	12	176	0.00000001933
Vitis vinifera	chr1	17	CH_vvi_247	4	4	0.00000517741
Vitis vinifera	chr10	17	CH_vvi_143	5	5	0.000000018905
Vitis vinifera	chr13	17	CH_vvi_301	5	15	0.0000550645
Vitis vinifera	chr14	17	CH_vvi_248	4	4	0.00000517741
Vitis vinifera	chr18	17	CH_vvi_78	7	7	0.000000000000244266
Vitis vinifera	chr9	17	CH_vvi_56	8	8	8.6415e-16
Vitis vinifera	chr9	18	CH_vvi_95	11	225	0.0000267064
Zea mays	3	17	CH_zma_34	6	7	0.000000000166604
Zea mays	3	17	CH_zma_117	4	4	0.00000292857
Zea mays	6	17	CH_zma_186	4	7	0.000101789
Zea mays	8	17	CH_zma_56	6	11	0.000000010889

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V