PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	17	CH_aly_65	3	5	0.000068109
Arabidopsis thaliana	2	17	CH_ath_285	3	4	0.0000552372
Capsella rubella	scaffold_4	17	CH_cru_150	4	6	0.000000628532
Eucalyptus grandis	scaffold_8	17	CH_egr_493	4	6	0.000000370563
Malus domestica	13	17	CH_mdo_134	3	3	0.00000646866
Oryza sativa ssp. japonica	3	17	CH_osa_254	3	3	0.0000105136
Populus trichocarpa	Chr01	17	CH_ptr_309	6	80	0.0000121047
Prunus persica	scaffold_1	17	CH_ppe_309	3	3	0.0000316463
Ricinus communis	29844	17	CH_rco_31	5	5	0.00000000000811159
Solanum lycopersicum	ch01	17	CH_sly_395	3	4	0.00028214
Solanum lycopersicum	ch08	17	CH_sly_47	7	10	0.0000000000000156088
Solanum lycopersicum	ch09	17	CH_sly_88	5	5	0.000000000100826
Vitis vinifera	chr5	17	CH_vvi_283	3	3	0.0000225646
Zea mays	1	17	CH_zma_153	3	3	0.0000206999

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V