PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.19
Description: misc.plastocyanin-like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A05	17	CH_bra_241	3	3	0.000316656
Capsella rubella	scaffold_4	17	CH_cru_178	5	16	0.00000457001
Citrus sinensis	scaffold00005	17	CH_csi_110	4	7	0.00000524014
Eucalyptus grandis	scaffold_3	17	CH_egr_190	9	38	0.000000000000064254
Eucalyptus grandis	scaffold_3	17	CH_egr_159	8	16	0.00000000000000431695
Eucalyptus grandis	scaffold_3	18	CH_egr_130	12	144	0.0000000000000534056
Glycine max	Gm17	17	CH_gma_385	3	3	0.000182719
Gossypium raimondii	Chr07	17	CH_gra_202	4	6	0.00000385843
Gossypium raimondii	Chr09	17	CH_gra_283	3	3	0.000163052
Malus domestica	2	17	CH_mdo_6	9	23	1.49807e-16
Malus domestica	6	17	CH_mdo_192	3	3	0.0000838465
Malus domestica	2	18	CH_mdo_10	10	158	0.00000000034161
Malus domestica	6	19	CH_mdo_4	3	3	0.0000366898
Manihot esculenta	scaffold02431	17	CH_mes_89	4	5	0.000000862401
Manihot esculenta	scaffold05979	17	CH_mes_164	3	3	0.000106346
Oryza sativa ssp. japonica	8	17	CH_osa_97	5	7	0.0000000015438
Populus trichocarpa	Chr06	17	CH_ptr_402	3	3	0.000263434
Populus trichocarpa	Chr15	17	CH_ptr_283	6	39	0.00000476121
Populus trichocarpa	Chr18	17	CH_ptr_173	5	7	0.0000000181071
Prunus persica	scaffold_4	17	CH_ppe_131	5	5	0.00000000195617
Prunus persica	scaffold_5	17	CH_ppe_142	6	12	0.00000000399337
Prunus persica	scaffold_7	17	CH_ppe_47	8	9	1.86795e-16
Ricinus communis	29927	17	CH_rco_60	5	6	0.00000000116321
Ricinus communis	30072	17	CH_rco_188	3	3	0.0000865586
Solanum lycopersicum	ch01	17	CH_sly_338	3	3	0.0000806763
Solanum lycopersicum	ch07	17	CH_sly_173	4	4	0.000000102225
Vitis vinifera	chr11	17	CH_vvi_167	4	4	0.0000000612328
Vitis vinifera	chr12	17	CH_vvi_300	3	3	0.0000519333
Zea mays	1	17	CH_zma_192	3	3	0.000117067
Zea mays	7	17	CH_zma_115	4	6	0.00000242332

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V