PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.16
Description: misc.myrosinases-lectin-jacalin

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_39	4	5	0.00000138489
Arabidopsis lyrata	scaffold_3	17	CH_aly_10	7	17	0.0000000000222003
Arabidopsis thaliana	1	17	CH_ath_132	6	16	0.00000000994289
Arabidopsis thaliana	1	17	CH_ath_393	3	4	0.000884403
Arabidopsis thaliana	1	17	CH_ath_207	4	5	0.00000200688
Arabidopsis thaliana	1	17	CH_ath_183	4	4	0.000000401962
Arabidopsis thaliana	3	17	CH_ath_182	4	4	0.000000401962
Arabidopsis thaliana	5	17	CH_ath_344	3	3	0.000221409
Arabidopsis thaliana	1	18	CH_ath_66	10	253	0.00000173269
Brassica rapa	A01	17	CH_bra_60	5	5	0.0000000165279
Brassica rapa	A03	17	CH_bra_192	4	6	0.000075112
Brassica rapa	A04	17	CH_bra_76	5	6	0.0000000988957
Brassica rapa	A05	17	CH_bra_168	4	5	0.0000251039
Brassica rapa	A06	17	CH_bra_8	8	8	5.58788e-16
Brassica rapa	A08	17	CH_bra_128	4	4	0.00000503413
Brassica rapa	A10	17	CH_bra_3	10	11	6.1651e-20
Brassica rapa	A06	18	CH_bra_12	13	131	0.0000000000349707
Brassica rapa	A10	18	CH_bra_3	10	11	6.1651e-20
Capsella rubella	scaffold_1	17	CH_cru_10	12	16	5.12778e-23
Capsella rubella	scaffold_1	17	CH_cru_322	3	3	0.000992369
Capsella rubella	scaffold_3	17	CH_cru_26	8	8	3.35935e-16
Capsella rubella	scaffold_5	17	CH_cru_208	4	5	0.0000162428
Capsella rubella	scaffold_5	17	CH_cru_127	5	6	0.0000000632282
Capsella rubella	scaffold_6	17	CH_cru_323	3	3	0.000992369
Capsella rubella	scaffold_8	17	CH_cru_100	5	5	0.0000000105667
Capsella rubella	scaffold_1	18	CH_cru_10	12	16	5.12778e-23
Chlamydomonas reinhardtii	chromosome_1	17	CH_cre_30	3	3	0.00000706627
Citrus sinensis	scaffold00051	17	CH_csi_30	5	5	0.000000000236989
Citrus sinensis	scaffold00163	17	CH_csi_210	3	4	0.000367278
Eucalyptus grandis	scaffold_10	17	CH_egr_600	7	45	0.00000772565
Eucalyptus grandis	scaffold_11	17	CH_egr_32	17	27	1.6514e-31
Eucalyptus grandis	scaffold_4	17	CH_egr_50	14	19	7.90867e-27
Eucalyptus grandis	scaffold_5	17	CH_egr_523	5	8	0.000000937744
Eucalyptus grandis	scaffold_7	17	CH_egr_569	6	22	0.00000405598
Eucalyptus grandis	scaffold_8	17	CH_egr_364	6	9	0.00000000474154
Eucalyptus grandis	scaffold_8	17	CH_egr_121	10	14	6.66534e-18
Eucalyptus grandis	scaffold_9	17	CH_egr_779	5	21	0.000328395
Eucalyptus grandis	scaffold_10	18	CH_egr_167	13	154	0.000000000379348
Eucalyptus grandis	scaffold_11	18	CH_egr_35	17	27	1.6514e-31
Eucalyptus grandis	scaffold_4	18	CH_egr_48	14	19	7.90867e-27
Eucalyptus grandis	scaffold_8	18	CH_egr_100	10	14	6.66534e-18
Glycine max	Gm08	17	CH_gma_84	6	10	0.0000000000562024
Glycine max	Gm08	17	CH_gma_118	5	7	0.00000000446657
Glycine max	Gm09	17	CH_gma_452	3	4	0.000512788
Glycine max	Gm18	17	CH_gma_376	3	3	0.000128324
Glycine max	Gm20	17	CH_gma_245	4	6	0.00000249346
Gossypium raimondii	Chr07	17	CH_gra_64	6	6	0.00000000000040341
Gossypium raimondii	Chr12	17	CH_gra_21	10	12	8.91615e-23
Gossypium raimondii	Chr12	18	CH_gra_21	10	12	8.91615e-23
Malus domestica	3	17	CH_mdo_32	6	13	0.00000000029153
Malus domestica	5	17	CH_mdo_317	3	5	0.000933353
Manihot esculenta	scaffold06916	17	CH_mes_20	6	6	0.0000000000000674382
Populus trichocarpa	Chr09	17	CH_ptr_47	8	12	2.31951e-16
Prunus persica	scaffold_4	17	CH_ppe_35	9	13	1.5115e-18
Prunus persica	scaffold_4	17	CH_ppe_69	7	10	0.000000000000113491
Prunus persica	scaffold_6	17	CH_ppe_73	8	21	0.000000000000287493
Prunus persica	scaffold_8	17	CH_ppe_251	4	6	0.0000035622
Prunus persica	scaffold_6	18	CH_ppe_81	10	227	0.000000188515
Ricinus communis	29751	17	CH_rco_94	6	31	0.0000001084
Solanum lycopersicum	ch02	17	CH_sly_308	3	3	0.0000325641
Solanum lycopersicum	ch10	17	CH_sly_142	5	12	0.000000021107
Vitis vinifera	chr3	17	CH_vvi_415	3	5	0.000672976
Vitis vinifera	chrUn	17	CH_vvi_414	3	5	0.000672976
Zea mays	1	17	CH_zma_196	3	3	0.00012983

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V