PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 20.1.7
Description: stress.biotic.PR-proteins

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_320	5	6	0.0001588
Arabidopsis thaliana	5	17	CH_ath_311	12	80	0.000106491
Arabidopsis thaliana	1	18	CH_ath_96	20	290	0.00085266
Arabidopsis thaliana	4	18	CH_ath_77	22	295	0.0000403221
Arabidopsis thaliana	5	18	CH_ath_76	21	267	0.000036969
Arabidopsis thaliana	5	18	CH_ath_83	21	287	0.000134825
Arabidopsis thaliana	4	20	CH_ath_35	18	295	0.000034288
Brassica rapa	A02	17	CH_bra_169	9	57	0.0000257585
Brassica rapa	A02	17	CH_bra_137	5	6	0.0000068526
Brassica rapa	A02	17	CH_bra_167	5	7	0.0000238294
Brassica rapa	A03	17	CH_bra_269	4	5	0.00073841
Brassica rapa	A07	17	CH_bra_268	4	5	0.00073841
Brassica rapa	A09	17	CH_bra_267	4	5	0.00073841
Brassica rapa	A09	17	CH_bra_18	10	19	0.00000000000263286
Brassica rapa	A09	17	CH_bra_201	6	17	0.000101979
Brassica rapa	A02	18	CH_bra_31	10	80	0.0000307366
Brassica rapa	A02	18	CH_bra_16	13	70	0.000000000417378
Brassica rapa	A02	18	CH_bra_24	14	140	0.000000264506
Brassica rapa	A09	18	CH_bra_10	10	19	0.00000000000263286
Capsella rubella	scaffold_15	17	CH_cru_123	7	9	0.0000000416942
Capsella rubella	scaffold_4	17	CH_cru_152	8	19	0.000000971656
Capsella rubella	scaffold_5	17	CH_cru_219	8	27	0.000026149
Capsella rubella	scaffold_5	17	CH_cru_55	9	12	0.0000000000376981
Capsella rubella	scaffold_8	17	CH_cru_15	18	45	1.17823e-18
Capsella rubella	scaffold_8	17	CH_cru_128	8	15	0.0000000864288
Capsella rubella	scaffold_5	18	CH_cru_43	11	53	0.00000124785
Capsella rubella	scaffold_5	18	CH_cru_52	12	90	0.0000361703
Capsella rubella	scaffold_7	18	CH_cru_71	17	259	0.000886413
Capsella rubella	scaffold_8	18	CH_cru_12	18	45	1.17823e-18
Capsella rubella	scaffold_8	18	CH_cru_24	23	194	0.0000000000126059
Citrus sinensis	scaffold00043	17	CH_csi_180	5	17	0.000186149
Eucalyptus grandis	scaffold_1	17	CH_egr_218	10	10	0.000000000000711389
Eucalyptus grandis	scaffold_10	17	CH_egr_262	14	32	0.0000000000479172
Eucalyptus grandis	scaffold_2	17	CH_egr_429	7	7	0.0000000728545
Eucalyptus grandis	scaffold_3	17	CH_egr_106	19	32	1.64428e-19
Eucalyptus grandis	scaffold_3	17	CH_egr_299	16	53	0.000000000461273
Eucalyptus grandis	scaffold_3	17	CH_egr_644	11	40	0.0000197973
Eucalyptus grandis	scaffold_4	17	CH_egr_430	7	7	0.0000000728545
Eucalyptus grandis	scaffold_5	17	CH_egr_295	15	44	0.000000000396911
Eucalyptus grandis	scaffold_5	17	CH_egr_43	30	67	9.71672e-28
Eucalyptus grandis	scaffold_5	17	CH_egr_386	10	17	0.0000000120622
Eucalyptus grandis	scaffold_5	17	CH_egr_198	12	15	0.000000000000138391
Eucalyptus grandis	scaffold_5	17	CH_egr_92	27	80	1.20022e-20
Eucalyptus grandis	scaffold_5	17	CH_egr_332	18	77	0.00000000145078
Eucalyptus grandis	scaffold_5	17	CH_egr_431	7	7	0.0000000728545
Eucalyptus grandis	scaffold_6	17	CH_egr_613	11	38	0.0000107183
Eucalyptus grandis	scaffold_6	17	CH_egr_563	6	6	0.00000339944
Eucalyptus grandis	scaffold_7	17	CH_egr_163	20	57	0.00000000000000741762
Eucalyptus grandis	scaffold_8	17	CH_egr_236	20	77	0.00000000000602022
Eucalyptus grandis	scaffold_8	17	CH_egr_44	30	68	1.70382e-27
Eucalyptus grandis	scaffold_8	17	CH_egr_844	8	24	0.000843749
Eucalyptus grandis	scaffold_8	17	CH_egr_12	30	44	1.78393e-35
Eucalyptus grandis	scaffold_9	17	CH_egr_727	5	5	0.000158409
Eucalyptus grandis	scaffold_1	18	CH_egr_147	10	10	0.000000000000711389
Eucalyptus grandis	scaffold_10	18	CH_egr_157	14	32	0.0000000000479172
Eucalyptus grandis	scaffold_3	18	CH_egr_148	26	137	0.000000000000819668
Eucalyptus grandis	scaffold_3	18	CH_egr_239	11	40	0.0000197973
Eucalyptus grandis	scaffold_3	18	CH_egr_249	26	286	0.0000315313
Eucalyptus grandis	scaffold_3	18	CH_egr_90	19	32	1.64428e-19
Eucalyptus grandis	scaffold_4	18	CH_egr_234	10	30	0.0000144503
Eucalyptus grandis	scaffold_5	18	CH_egr_154	35	298	0.0000000000180426
Eucalyptus grandis	scaffold_5	18	CH_egr_14	53	205	6.54073e-37
Eucalyptus grandis	scaffold_6	18	CH_egr_232	11	38	0.0000107183
Eucalyptus grandis	scaffold_8	18	CH_egr_141	24	106	0.000000000000191738
Eucalyptus grandis	scaffold_8	18	CH_egr_1	92	299	8.45319e-75
Glycine max	Gm01	17	CH_gma_357	5	9	0.000109407
Glycine max	Gm01	17	CH_gma_265	7	22	0.00000660478
Glycine max	Gm02	17	CH_gma_208	5	5	0.000000888684
Glycine max	Gm03	17	CH_gma_298	5	7	0.0000184471
Glycine max	Gm03	17	CH_gma_209	5	5	0.000000888684
Glycine max	Gm06	17	CH_gma_16	21	80	1.22558e-22
Glycine max	Gm06	17	CH_gma_329	9	65	0.0000452592
Glycine max	Gm08	17	CH_gma_375	4	4	0.000128132
Glycine max	Gm12	17	CH_gma_322	9	64	0.0000392343
Glycine max	Gm16	17	CH_gma_48	11	19	0.00000000000000672256
Glycine max	Gm16	17	CH_gma_156	8	21	0.0000000548255
Glycine max	Gm16	17	CH_gma_80	7	7	0.0000000000424091
Glycine max	Gm16	17	CH_gma_9	25	51	7.02468e-36
Glycine max	Gm17	17	CH_gma_222	6	10	0.00000126057
Glycine max	Gm19	17	CH_gma_207	5	5	0.000000888684
Glycine max	Gm01	18	CH_gma_82	11	156	0.000876917
Glycine max	Gm06	18	CH_gma_13	25	94	8.83708e-28
Glycine max	Gm12	18	CH_gma_78	10	111	0.00037639
Glycine max	Gm16	18	CH_gma_29	11	19	0.00000000000000672256
Glycine max	Gm16	18	CH_gma_10	25	51	7.02468e-36
Gossypium raimondii	Chr03	17	CH_gra_51	11	22	0.00000000000000105295
Gossypium raimondii	Chr09	17	CH_gra_43	9	9	6.7649e-17
Gossypium raimondii	Chr11	17	CH_gra_27	13	21	6.97105e-21
Gossypium raimondii	Chr03	18	CH_gra_40	11	22	0.00000000000000105295
Gossypium raimondii	Chr11	18	CH_gra_26	13	21	6.97105e-21
Malus domestica	1	17	CH_mdo_25	9	16	0.0000000000365514
Malus domestica	14	17	CH_mdo_288	5	11	0.000479228
Malus domestica	17	17	CH_mdo_166	6	14	0.0000230452
Malus domestica	2	17	CH_mdo_24	14	76	0.0000000000325811
Malus domestica	2	17	CH_mdo_10	14	38	5.94821e-16
Malus domestica	2	17	CH_mdo_175	7	26	0.0000350907
Malus domestica	2	17	CH_mdo_164	5	7	0.0000223382
Malus domestica	6	17	CH_mdo_34	7	8	0.000000000480279
Malus domestica	2	18	CH_mdo_2	33	257	1.05559e-25
Manihot esculenta	scaffold00097	17	CH_mes_48	5	5	0.00000000701898
Manihot esculenta	scaffold05280	17	CH_mes_245	3	3	0.000717106
Manihot esculenta	scaffold11897	17	CH_mes_212	4	10	0.000467572
Oryza sativa ssp. japonica	1	17	CH_osa_275	7	20	0.0000253737
Oryza sativa ssp. japonica	11	17	CH_osa_116	13	71	0.00000000826929
Oryza sativa ssp. japonica	11	17	CH_osa_258	8	29	0.0000122548
Oryza sativa ssp. japonica	11	17	CH_osa_130	9	23	0.0000000230216
Oryza sativa ssp. japonica	11	17	CH_osa_237	7	17	0.00000652444
Oryza sativa ssp. japonica	11	17	CH_osa_316	5	7	0.0000858604
Oryza sativa ssp. japonica	12	17	CH_osa_218	11	69	0.00000304283
Oryza sativa ssp. japonica	12	17	CH_osa_195	7	14	0.0000011801
Oryza sativa ssp. japonica	4	17	CH_osa_410	6	18	0.00065606
Oryza sativa ssp. japonica	8	17	CH_osa_323	8	37	0.000103136
Oryza sativa ssp. japonica	11	18	CH_osa_79	19	298	0.00000580372
Oryza sativa ssp. japonica	11	18	CH_osa_52	15	118	0.0000000295606
Oryza sativa ssp. japonica	12	18	CH_osa_37	22	185	0.000000000000491446
Physcomitrella patens	scaffold_107	17	CH_ppa_16	4	6	0.0000198487
Physcomitrella patens	scaffold_31	17	CH_ppa_50	3	3	0.000525353
Populus trichocarpa	Chr01	17	CH_ptr_486	4	5	0.000891922
Populus trichocarpa	Chr03	17	CH_ptr_485	4	5	0.000891922
Populus trichocarpa	Chr05	17	CH_ptr_385	5	9	0.000178838
Populus trichocarpa	Chr05	17	CH_ptr_261	7	18	0.0000028066
Populus trichocarpa	Chr07	17	CH_ptr_386	5	9	0.000178838
Populus trichocarpa	Chr07	17	CH_ptr_200	6	7	0.0000000820974
Populus trichocarpa	Chr10	17	CH_ptr_219	6	8	0.000000326109
Populus trichocarpa	Chr11	17	CH_ptr_22	22	73	4.64722e-24
Populus trichocarpa	Chr13	17	CH_ptr_43	12	18	5.54392e-17
Populus trichocarpa	Chr14	17	CH_ptr_120	9	17	0.000000000141237
Populus trichocarpa	Chr16	17	CH_ptr_387	4	4	0.000179556
Populus trichocarpa	Chr17	17	CH_ptr_38	14	29	1.35614e-17
Populus trichocarpa	Chr19	17	CH_ptr_71	12	26	0.0000000000000271913
Populus trichocarpa	Chr19	17	CH_ptr_155	9	23	0.00000000454575
Populus trichocarpa	Chr19	17	CH_ptr_96	10	19	0.00000000000425991
Populus trichocarpa	scaffold_38	17	CH_ptr_127	10	27	0.00000000036697
Populus trichocarpa	scaffold_47	17	CH_ptr_80	12	30	0.000000000000236453
Populus trichocarpa	scaffold_73	17	CH_ptr_209	8	21	0.000000142232
Populus trichocarpa	Chr11	18	CH_ptr_21	22	73	4.64722e-24
Populus trichocarpa	Chr13	18	CH_ptr_40	12	18	5.54392e-17
Populus trichocarpa	Chr17	18	CH_ptr_34	14	29	1.35614e-17
Populus trichocarpa	Chr19	18	CH_ptr_61	10	19	0.00000000000425991
Populus trichocarpa	Chr19	18	CH_ptr_53	12	26	0.0000000000000271913
Populus trichocarpa	scaffold_38	18	CH_ptr_70	10	27	0.00000000036697
Populus trichocarpa	scaffold_47	18	CH_ptr_58	12	30	0.000000000000236453
Prunus persica	scaffold_1	17	CH_ppe_178	12	69	0.0000000540565
Prunus persica	scaffold_2	17	CH_ppe_91	14	60	0.00000000000925881
Prunus persica	scaffold_4	17	CH_ppe_366	4	4	0.000209083
Prunus persica	scaffold_5	17	CH_ppe_368	4	4	0.000209083
Prunus persica	scaffold_6	17	CH_ppe_348	5	8	0.000105571
Prunus persica	scaffold_6	17	CH_ppe_367	4	4	0.000209083
Prunus persica	scaffold_7	17	CH_ppe_115	10	24	0.000000000212733
Prunus persica	scaffold_8	17	CH_ppe_70	15	58	0.000000000000144617
Prunus persica	scaffold_8	17	CH_ppe_181	10	39	0.0000000609239
Prunus persica	scaffold_8	17	CH_ppe_48	15	40	2.27246e-16
Prunus persica	scaffold_1	18	CH_ppe_66	16	133	0.0000000041436
Prunus persica	scaffold_2	18	CH_ppe_51	14	60	0.00000000000925881
Prunus persica	scaffold_7	18	CH_ppe_58	10	24	0.000000000212733
Prunus persica	scaffold_8	18	CH_ppe_28	24	126	3.37671e-20
Ricinus communis	29757	17	CH_rco_85	6	9	0.0000000203355
Ricinus communis	29801	17	CH_rco_179	4	5	0.0000554911
Ricinus communis	29838	17	CH_rco_154	5	10	0.0000129766
Ricinus communis	29910	17	CH_rco_20	11	32	0.0000000000000546502
Ricinus communis	29910	18	CH_rco_12	11	32	0.0000000000000546502
Solanum lycopersicum	ch02	17	CH_sly_297	7	61	0.0000233098
Solanum lycopersicum	ch07	17	CH_sly_231	4	4	0.00000263529
Solanum lycopersicum	ch12	17	CH_sly_217	6	22	0.0000015524
Vitis vinifera	chr10	17	CH_vvi_306	4	4	0.0000623723
Vitis vinifera	chr14	17	CH_vvi_281	7	28	0.0000209064
Vitis vinifera	chr14	17	CH_vvi_150	8	21	0.0000000254993
Vitis vinifera	chr18	17	CH_vvi_74	15	75	0.000000000000106604
Vitis vinifera	chr18	17	CH_vvi_139	11	59	0.00000000848662
Vitis vinifera	chr18_random	17	CH_vvi_200	6	10	0.000000603019
Vitis vinifera	chr5	17	CH_vvi_118	7	9	0.000000000712085
Vitis vinifera	chr5	17	CH_vvi_130	8	17	0.00000000312077
Vitis vinifera	chr6	17	CH_vvi_441	4	6	0.000925237
Vitis vinifera	chr7	17	CH_vvi_99	8	11	0.0000000000219634
Vitis vinifera	chr14	18	CH_vvi_63	19	284	0.0000000046488
Vitis vinifera	chr18	18	CH_vvi_11	37	282	9.08935e-32
Vitis vinifera	chr18_random	18	CH_vvi_80	12	108	0.000000416891
Vitis vinifera	chr5	18	CH_vvi_55	16	153	0.000000000404152

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V