Functional clusters
Information
- Type
- Mapman term
- Identifier
- 2.2.1.3.2
- Description
- major CHO metabolism.degradation.sucrose.invertases.cell wall
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_3 | 17 | CH_aly_77 | 2 | 2 | 0.000189412 |
Arabidopsis thaliana | 3 | 17 | CH_ath_360 | 2 | 2 | 0.000357122 |
Chlamydomonas reinhardtii | chromosome_12 | 17 | CH_cre_10 | 4 | 4 | 0.000000000556577 |
Chlamydomonas reinhardtii | chromosome_12 | 19 | CH_cre_1 | 4 | 4 | 0.000000000154605 |
Citrus sinensis | scaffold00032 | 17 | CH_csi_68 | 3 | 3 | 0.000000204533 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_849 | 2 | 2 | 0.000879404 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_850 | 2 | 2 | 0.000879404 |
Glycine max | Gm20 | 17 | CH_gma_141 | 4 | 8 | 0.0000000327524 |
Populus trichocarpa | Chr06 | 17 | CH_ptr_448 | 2 | 2 | 0.000499813 |
Populus trichocarpa | Chr16 | 17 | CH_ptr_447 | 2 | 2 | 0.000499813 |
Prunus persica | scaffold_7 | 17 | CH_ppe_93 | 4 | 4 | 0.0000000000168576 |
Ricinus communis | 28629 | 17 | CH_rco_243 | 2 | 2 | 0.000589188 |
Vitis vinifera | chr4 | 17 | CH_vvi_429 | 2 | 2 | 0.00076063 |
Zea mays | 2 | 17 | CH_zma_99 | 3 | 4 | 0.000000849749 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |