Functional clusters
Information
- Type
- Mapman term
- Identifier
- 17.8.1
- Description
- hormone metabolism.salicylic acid.synthesis-degradation
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 5 | 17 | CH_ath_338 | 3 | 7 | 0.000179951 |
Brassica rapa | A10 | 17 | CH_bra_66 | 4 | 4 | 0.0000000303702 |
Capsella rubella | scaffold_2 | 17 | CH_cru_267 | 3 | 6 | 0.000232056 |
Capsella rubella | scaffold_7 | 17 | CH_cru_195 | 3 | 3 | 0.0000116221 |
Citrus sinensis | scaffold00058 | 17 | CH_csi_121 | 3 | 3 | 0.0000114538 |
Eucalyptus grandis | scaffold_11 | 17 | CH_egr_150 | 7 | 8 | 5.74854e-16 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_762 | 3 | 4 | 0.000219655 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_761 | 3 | 4 | 0.000219655 |
Eucalyptus grandis | scaffold_7 | 17 | CH_egr_296 | 5 | 6 | 0.000000000398103 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_29 | 13 | 17 | 1.04988e-31 |
Eucalyptus grandis | scaffold_8 | 18 | CH_egr_32 | 13 | 17 | 1.04988e-31 |
Glycine max | Gm09 | 17 | CH_gma_132 | 4 | 5 | 0.000000015662 |
Glycine max | Gm16 | 17 | CH_gma_77 | 5 | 7 | 0.000000000029266 |
Glycine max | Gm18 | 17 | CH_gma_113 | 4 | 4 | 0.00000000313358 |
Gossypium raimondii | Chr08 | 17 | CH_gra_253 | 3 | 5 | 0.0000572954 |
Gossypium raimondii | Chr11 | 17 | CH_gra_66 | 6 | 12 | 0.000000000000498622 |
Malus domestica | 6 | 17 | CH_mdo_5 | 7 | 9 | 7.20536e-17 |
Manihot esculenta | scaffold07520 | 17 | CH_mes_128 | 3 | 3 | 0.00000930702 |
Manihot esculenta | scaffold08847 | 17 | CH_mes_144 | 3 | 4 | 0.0000372076 |
Manihot esculenta | scaffold10173 | 17 | CH_mes_127 | 3 | 3 | 0.00000930702 |
Oryza sativa ssp. japonica | 11 | 17 | CH_osa_32 | 9 | 35 | 5.50682e-16 |
Oryza sativa ssp. japonica | 4 | 17 | CH_osa_142 | 5 | 15 | 0.0000000704056 |
Oryza sativa ssp. japonica | 6 | 17 | CH_osa_141 | 6 | 38 | 0.0000000502816 |
Oryza sativa ssp. japonica | 6 | 17 | CH_osa_27 | 9 | 25 | 1.60397e-17 |
Oryza sativa ssp. japonica | 6 | 17 | CH_osa_260 | 4 | 12 | 0.0000144109 |
Oryza sativa ssp. japonica | 6 | 18 | CH_osa_35 | 11 | 175 | 0.00000000000033171 |
Populus trichocarpa | Chr17 | 17 | CH_ptr_201 | 6 | 15 | 0.0000000869348 |
Populus trichocarpa | Chr19 | 17 | CH_ptr_208 | 5 | 7 | 0.000000137358 |
Prunus persica | scaffold_5 | 17 | CH_ppe_161 | 4 | 4 | 0.0000000142166 |
Prunus persica | scaffold_8 | 17 | CH_ppe_55 | 7 | 11 | 0.00000000000000174943 |
Solanum lycopersicum | ch09 | 17 | CH_sly_454 | 3 | 3 | 0.000604438 |
Vitis vinifera | chr1 | 17 | CH_vvi_73 | 6 | 6 | 0.0000000000000930199 |
Vitis vinifera | chr18 | 17 | CH_vvi_359 | 3 | 4 | 0.000226992 |
Vitis vinifera | chr4 | 17 | CH_vvi_19 | 12 | 15 | 4.37656e-29 |
Vitis vinifera | chr4 | 17 | CH_vvi_303 | 3 | 3 | 0.0000568021 |
Vitis vinifera | chr4 | 18 | CH_vvi_20 | 12 | 15 | 4.37656e-29 |
Zea mays | 4 | 17 | CH_zma_49 | 4 | 5 | 0.00000000347191 |
Zea mays | 5 | 17 | CH_zma_19 | 5 | 6 | 0.00000000000125729 |
Zea mays | 9 | 17 | CH_zma_110 | 3 | 3 | 0.00000212463 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |