PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A01	17	CH_bra_147	3	3	0.0000108558
Citrus sinensis	scaffold00080	17	CH_csi_22	5	6	0.00000000000662537
Eucalyptus grandis	scaffold_10	17	CH_egr_303	5	8	0.000000000588254
Eucalyptus grandis	scaffold_3	17	CH_egr_140	7	9	1.79537e-16
Eucalyptus grandis	scaffold_6	17	CH_egr_403	6	40	0.000000027841
Gossypium raimondii	Chr07	17	CH_gra_336	3	5	0.000494132
Gossypium raimondii	Chr09	17	CH_gra_143	4	5	0.0000002585
Gossypium raimondii	Chr11	17	CH_gra_288	3	4	0.000197813
Gossypium raimondii	Chr13	17	CH_gra_2	17	18	1.16133e-46
Gossypium raimondii	Chr13	18	CH_gra_4	17	18	1.16133e-46
Malus domestica	8	17	CH_mdo_14	6	11	0.00000000000292159
Manihot esculenta	scaffold02853	17	CH_mes_139	3	3	0.0000210777
Manihot esculenta	scaffold04151	17	CH_mes_22	6	7	0.0000000000000934267
Populus trichocarpa	Chr01	17	CH_ptr_56	6	8	0.00000000000000157326
Prunus persica	scaffold_3	17	CH_ppe_201	4	7	0.000000190291
Prunus persica	scaffold_4	17	CH_ppe_359	3	6	0.000177454
Ricinus communis	29841	17	CH_rco_10	7	8	1.09887e-17
Solanum lycopersicum	ch02	17	CH_sly_163	4	5	0.0000000784827
Vitis vinifera	chr9	17	CH_vvi_53	6	7	3.70581e-16

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V