Functional clusters
Information
- Type
- Mapman term
- Identifier
- 17.5.1
- Description
- hormone metabolism.ethylene.synthesis-degradation
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica rapa | A03 | 17 | CH_bra_71 | 5 | 5 | 0.000000038879 |
Brassica rapa | A04 | 17 | CH_bra_70 | 5 | 5 | 0.000000038879 |
Capsella rubella | scaffold_3 | 17 | CH_cru_182 | 4 | 4 | 0.00000544665 |
Capsella rubella | scaffold_8 | 17 | CH_cru_61 | 6 | 6 | 0.0000000000738845 |
Citrus sinensis | scaffold00043 | 17 | CH_csi_40 | 6 | 7 | 0.00000000184622 |
Citrus sinensis | scaffold00058 | 17 | CH_csi_147 | 4 | 5 | 0.0000554769 |
Eucalyptus grandis | scaffold_11 | 17 | CH_egr_232 | 7 | 7 | 0.00000000000373574 |
Eucalyptus grandis | scaffold_11 | 17 | CH_egr_161 | 9 | 11 | 0.00000000000000532877 |
Eucalyptus grandis | scaffold_2 | 17 | CH_egr_802 | 4 | 6 | 0.000397693 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_654 | 4 | 4 | 0.0000267372 |
Eucalyptus grandis | scaffold_5 | 17 | CH_egr_37 | 16 | 19 | 7.14414e-30 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_174 | 10 | 18 | 0.0000000000000209156 |
Eucalyptus grandis | scaffold_5 | 18 | CH_egr_39 | 16 | 19 | 7.14414e-30 |
Glycine max | Gm02 | 17 | CH_gma_165 | 5 | 5 | 0.0000000865654 |
Glycine max | Gm02 | 17 | CH_gma_411 | 4 | 6 | 0.000297143 |
Glycine max | Gm08 | 17 | CH_gma_140 | 6 | 9 | 0.0000000310719 |
Glycine max | Gm08 | 17 | CH_gma_302 | 4 | 4 | 0.0000199485 |
Glycine max | Gm09 | 17 | CH_gma_50 | 8 | 8 | 0.00000000000000689449 |
Glycine max | Gm14 | 17 | CH_gma_356 | 4 | 5 | 0.0000993945 |
Glycine max | Gm15 | 17 | CH_gma_258 | 5 | 8 | 0.00000479522 |
Glycine max | Gm18 | 17 | CH_gma_301 | 4 | 5 | 0.0000199485 |
Glycine max | Gm09 | 18 | CH_gma_52 | 10 | 75 | 0.0000000805179 |
Gossypium raimondii | Chr02 | 17 | CH_gra_161 | 5 | 6 | 0.000000583001 |
Gossypium raimondii | Chr06 | 17 | CH_gra_42 | 10 | 13 | 6.26157e-17 |
Gossypium raimondii | Chr10 | 17 | CH_gra_90 | 7 | 9 | 0.0000000000779812 |
Gossypium raimondii | Chr13 | 17 | CH_gra_185 | 8 | 45 | 0.00000189234 |
Gossypium raimondii | Chr06 | 18 | CH_gra_35 | 10 | 13 | 6.26157e-17 |
Malus domestica | 2 | 17 | CH_mdo_63 | 5 | 6 | 0.0000000261306 |
Malus domestica | 5 | 17 | CH_mdo_230 | 4 | 9 | 0.000220438 |
Manihot esculenta | scaffold08673 | 17 | CH_mes_133 | 4 | 4 | 0.0000134949 |
Manihot esculenta | scaffold09120 | 17 | CH_mes_19 | 8 | 9 | 0.000000000000066827 |
Oryza sativa ssp. japonica | 6 | 17 | CH_osa_90 | 6 | 14 | 0.000000000734213 |
Oryza sativa ssp. japonica | 8 | 17 | CH_osa_197 | 5 | 17 | 0.00000121845 |
Physcomitrella patens | scaffold_299 | 17 | CH_ppa_48 | 3 | 4 | 0.000489013 |
Populus trichocarpa | Chr01 | 17 | CH_ptr_134 | 6 | 7 | 0.000000000790247 |
Populus trichocarpa | Chr11 | 17 | CH_ptr_298 | 5 | 10 | 0.00000759638 |
Prunus persica | scaffold_4 | 17 | CH_ppe_227 | 5 | 7 | 0.000000912509 |
Prunus persica | scaffold_4 | 17 | CH_ppe_281 | 4 | 4 | 0.0000102029 |
Prunus persica | scaffold_8 | 17 | CH_ppe_265 | 5 | 9 | 0.00000543592 |
Prunus persica | scaffold_8 | 17 | CH_ppe_171 | 6 | 10 | 0.0000000385264 |
Ricinus communis | 29693 | 17 | CH_rco_76 | 6 | 10 | 0.0000000101103 |
Ricinus communis | 29806 | 17 | CH_rco_139 | 4 | 4 | 0.00000384486 |
Solanum lycopersicum | ch02 | 17 | CH_sly_27 | 11 | 15 | 1.06061e-18 |
Solanum lycopersicum | ch03 | 17 | CH_sly_287 | 4 | 4 | 0.0000179138 |
Solanum lycopersicum | ch09 | 17 | CH_sly_5 | 16 | 17 | 2.29734e-32 |
Solanum lycopersicum | ch09 | 17 | CH_sly_342 | 4 | 5 | 0.0000892301 |
Solanum lycopersicum | ch10 | 17 | CH_sly_392 | 4 | 6 | 0.000266678 |
Solanum lycopersicum | ch11 | 17 | CH_sly_288 | 4 | 4 | 0.0000179138 |
Solanum lycopersicum | ch02 | 18 | CH_sly_23 | 11 | 15 | 1.06061e-18 |
Solanum lycopersicum | ch09 | 18 | CH_sly_5 | 16 | 17 | 2.29734e-32 |
Vitis vinifera | chr10 | 17 | CH_vvi_10 | 18 | 24 | 1.71669e-32 |
Vitis vinifera | chr11 | 17 | CH_vvi_282 | 4 | 4 | 0.0000214353 |
Vitis vinifera | chr2 | 17 | CH_vvi_66 | 9 | 12 | 0.0000000000000172291 |
Vitis vinifera | chr3 | 17 | CH_vvi_40 | 12 | 20 | 1.2208e-18 |
Vitis vinifera | chr5 | 17 | CH_vvi_13 | 16 | 18 | 8.71135e-31 |
Vitis vinifera | chr10 | 18 | CH_vvi_10 | 18 | 24 | 1.71669e-32 |
Vitis vinifera | chr2 | 18 | CH_vvi_103 | 10 | 144 | 0.000166182 |
Vitis vinifera | chr3 | 18 | CH_vvi_34 | 12 | 20 | 1.2208e-18 |
Vitis vinifera | chr5 | 18 | CH_vvi_14 | 16 | 18 | 8.71135e-31 |
Zea mays | 10 | 17 | CH_zma_71 | 6 | 18 | 0.000000057579 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |