PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 17.5
Description: hormone metabolism.ethylene

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_323	4	8	0.000172047
Brassica rapa	A10	17	CH_bra_187	5	9	0.0000616428
Brassica rapa	A10	18	CH_bra_40	13	249	0.000599155
Citrus sinensis	scaffold00022	17	CH_csi_144	4	4	0.0000493699
Eucalyptus grandis	scaffold_7	17	CH_egr_272	10	28	0.000000000102704
Eucalyptus grandis	scaffold_8	17	CH_egr_519	6	10	0.000000816973
Eucalyptus grandis	scaffold_8	17	CH_egr_23	22	39	2.80705e-33
Eucalyptus grandis	scaffold_11	18	CH_egr_133	10	16	0.0000000000000675164
Eucalyptus grandis	scaffold_7	18	CH_egr_160	10	28	0.000000000102704
Eucalyptus grandis	scaffold_8	18	CH_egr_25	22	39	2.80705e-33
Gossypium raimondii	Chr04	17	CH_gra_247	6	15	0.0000470106
Gossypium raimondii	Chr04	17	CH_gra_178	5	5	0.00000125469
Gossypium raimondii	Chr06	17	CH_gra_46	10	11	4.23991e-16
Gossypium raimondii	Chr06	18	CH_gra_37	10	11	4.23991e-16
Gossypium raimondii	Chr13	18	CH_gra_70	10	100	0.000352861
Malus domestica	10	17	CH_mdo_176	8	74	0.0000358292
Malus domestica	13	17	CH_mdo_85	7	23	0.000000176115
Manihot esculenta	scaffold01551	17	CH_mes_41	9	22	0.00000000170061
Manihot esculenta	scaffold10563	17	CH_mes_13	11	17	0.00000000000000285119
Manihot esculenta	scaffold10563	18	CH_mes_8	11	17	0.00000000000000285119
Oryza sativa ssp. japonica	6	18	CH_osa_108	10	175	0.000122078
Populus trichocarpa	Chr02	17	CH_ptr_193	8	18	0.0000000524768
Populus trichocarpa	Chr05	17	CH_ptr_300	6	11	0.00000777432
Populus trichocarpa	Chr08	17	CH_ptr_431	6	19	0.0004302
Populus trichocarpa	Chr10	17	CH_ptr_299	6	11	0.00000777432
Prunus persica	scaffold_1	17	CH_ppe_12	18	29	1.5614e-28
Prunus persica	scaffold_8	17	CH_ppe_75	11	28	0.000000000000340245
Prunus persica	scaffold_1	18	CH_ppe_13	18	29	1.5614e-28
Prunus persica	scaffold_8	18	CH_ppe_48	11	28	0.000000000000340245
Ricinus communis	29603	17	CH_rco_46	8	16	0.00000000015212
Solanum lycopersicum	ch09	17	CH_sly_258	5	6	0.00000610305

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V