PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 17.2.3
Description: hormone metabolism.auxin.induced-regulated-responsive-activated

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_44	4	4	0.00000452246
Arabidopsis lyrata	scaffold_6	17	CH_aly_72	4	7	0.000156992
Arabidopsis lyrata	scaffold_1	19	CH_aly_3	3	3	0.000827675
Arabidopsis thaliana	1	17	CH_ath_215	5	8	0.00000298257
Arabidopsis thaliana	1	17	CH_ath_84	8	12	0.00000000000202418
Arabidopsis thaliana	3	17	CH_ath_143	6	9	0.0000000191704
Arabidopsis thaliana	4	17	CH_ath_339	4	6	0.000185833
Arabidopsis thaliana	4	17	CH_ath_79	7	7	0.000000000000982173
Arabidopsis thaliana	5	17	CH_ath_194	5	7	0.00000112251
Arabidopsis thaliana	5	17	CH_ath_165	6	11	0.000000104663
Brassica rapa	A01	17	CH_bra_46	6	6	0.00000000389667
Brassica rapa	A02	17	CH_bra_2	11	11	5.03541e-20
Brassica rapa	A03	17	CH_bra_17	8	9	0.00000000000155502
Brassica rapa	A08	17	CH_bra_121	5	6	0.0000034618
Brassica rapa	A09	17	CH_bra_90	6	9	0.000000321697
Brassica rapa	A10	17	CH_bra_6	11	12	6.00597e-19
Brassica rapa	A02	18	CH_bra_2	11	11	5.03541e-20
Brassica rapa	A10	18	CH_bra_6	11	12	6.00597e-19
Capsella rubella	scaffold_1	17	CH_cru_224	4	4	0.0000324955
Capsella rubella	scaffold_1	17	CH_cru_52	8	12	0.0000000000176193
Capsella rubella	scaffold_2	17	CH_cru_223	4	4	0.0000324955
Capsella rubella	scaffold_3	17	CH_cru_96	6	7	0.00000000766779
Capsella rubella	scaffold_6	17	CH_cru_291	4	6	0.000482853
Capsella rubella	scaffold_6	17	CH_cru_34	10	16	0.00000000000000906386
Capsella rubella	scaffold_7	17	CH_cru_251	4	5	0.000161712
Capsella rubella	scaffold_7	17	CH_cru_46	7	7	0.000000000006345
Capsella rubella	scaffold_1	18	CH_cru_51	10	111	0.0000357631
Capsella rubella	scaffold_6	18	CH_cru_18	10	16	0.00000000000000906386
Citrus sinensis	scaffold00023	17	CH_csi_6	11	12	7.04406e-21
Citrus sinensis	scaffold00077	17	CH_csi_179	4	6	0.000165768
Citrus sinensis	scaffold00023	18	CH_csi_4	11	12	7.04406e-21
Eucalyptus grandis	scaffold_1	17	CH_egr_658	4	4	0.0000304736
Eucalyptus grandis	scaffold_7	17	CH_egr_180	10	18	0.000000000000029129
Eucalyptus grandis	scaffold_8	17	CH_egr_22	18	22	2.33189e-33
Eucalyptus grandis	scaffold_8	17	CH_egr_659	4	4	0.0000304736
Eucalyptus grandis	scaffold_8	17	CH_egr_51	13	13	9.66903e-26
Eucalyptus grandis	scaffold_9	17	CH_egr_2	25	29	5.12208e-49
Eucalyptus grandis	scaffold_9	17	CH_egr_113	10	10	6.91661e-19
Eucalyptus grandis	scaffold_7	18	CH_egr_126	10	18	0.000000000000029129
Eucalyptus grandis	scaffold_8	18	CH_egr_24	18	22	2.33189e-33
Eucalyptus grandis	scaffold_8	18	CH_egr_49	13	13	9.66903e-26
Eucalyptus grandis	scaffold_9	18	CH_egr_8	25	29	5.12208e-49
Glycine max	Gm03	17	CH_gma_380	4	4	0.000167364
Glycine max	Gm04	17	CH_gma_70	8	9	0.00000000000446353
Glycine max	Gm06	17	CH_gma_2	29	33	1.78084e-53
Glycine max	Gm06	17	CH_gma_61	9	11	0.000000000000198992
Glycine max	Gm08	17	CH_gma_125	6	6	0.00000000918626
Glycine max	Gm09	17	CH_gma_1	30	31	9.57903e-59
Glycine max	Gm10	17	CH_gma_60	9	11	0.000000000000198992
Glycine max	Gm12	17	CH_gma_11	19	22	2.19734e-33
Glycine max	Gm12	17	CH_gma_8	23	33	3.22521e-37
Glycine max	Gm13	17	CH_gma_124	6	6	0.00000000918626
Glycine max	Gm06	18	CH_gma_3	34	41	1.52259e-61
Glycine max	Gm09	18	CH_gma_2	33	35	6.05343e-64
Glycine max	Gm10	18	CH_gma_36	10	24	0.0000000000479728
Glycine max	Gm12	18	CH_gma_9	23	33	3.22521e-37
Glycine max	Gm12	18	CH_gma_11	19	22	2.19734e-33
Gossypium raimondii	Chr01	17	CH_gra_4	21	24	4.7977e-38
Gossypium raimondii	Chr02	17	CH_gra_266	4	4	0.000104656
Gossypium raimondii	Chr05	17	CH_gra_1	25	26	1.27223e-48
Gossypium raimondii	Chr06	17	CH_gra_99	7	8	0.00000000030855
Gossypium raimondii	Chr07	17	CH_gra_84	9	15	0.00000000000947043
Gossypium raimondii	Chr09	17	CH_gra_114	8	18	0.000000011365
Gossypium raimondii	Chr12	17	CH_gra_337	4	5	0.000520246
Gossypium raimondii	Chr01	18	CH_gra_7	21	24	4.7977e-38
Gossypium raimondii	Chr05	18	CH_gra_1	25	26	1.27223e-48
Malus domestica	12	17	CH_mdo_160	4	5	0.0000206673
Manihot esculenta	scaffold02994	17	CH_mes_147	4	4	0.0000449224
Manihot esculenta	scaffold03252	17	CH_mes_1	19	19	4.96456e-38
Manihot esculenta	scaffold03802	17	CH_mes_75	5	5	0.000000300412
Manihot esculenta	scaffold06814	17	CH_mes_43	6	6	0.00000000199471
Manihot esculenta	scaffold07036	17	CH_mes_96	5	6	0.00000179241
Manihot esculenta	scaffold11069	17	CH_mes_148	4	4	0.0000449224
Manihot esculenta	scaffold03252	18	CH_mes_1	19	19	4.96456e-38
Oryza sativa ssp. japonica	3	17	CH_osa_280	4	6	0.0000307357
Oryza sativa ssp. japonica	4	17	CH_osa_251	4	5	0.0000102653
Oryza sativa ssp. japonica	9	17	CH_osa_4	18	22	1.75209e-39
Oryza sativa ssp. japonica	9	18	CH_osa_4	18	22	1.75209e-39
Populus trichocarpa	Chr02	17	CH_ptr_327	4	4	0.000030066
Populus trichocarpa	Chr04	17	CH_ptr_10	19	21	1.89897e-37
Populus trichocarpa	Chr09	17	CH_ptr_18	15	19	6.21156e-27
Populus trichocarpa	Chr09	17	CH_ptr_326	4	4	0.000030066
Populus trichocarpa	Chr17	17	CH_ptr_325	4	4	0.000030066
Populus trichocarpa	Chr04	18	CH_ptr_8	19	21	1.89897e-37
Populus trichocarpa	Chr09	18	CH_ptr_16	15	19	6.21156e-27
Prunus persica	scaffold_1	17	CH_ppe_438	4	7	0.000765902
Prunus persica	scaffold_1	17	CH_ppe_298	4	4	0.0000221621
Prunus persica	scaffold_6	17	CH_ppe_216	5	6	0.000000691981
Prunus persica	scaffold_8	17	CH_ppe_2	30	38	4.60613e-58
Prunus persica	scaffold_8	17	CH_ppe_123	6	6	0.000000000601287
Prunus persica	scaffold_8	18	CH_ppe_2	34	46	1.16589e-64
Ricinus communis	29727	17	CH_rco_201	4	6	0.000118246
Ricinus communis	29838	17	CH_rco_1	17	25	6.04853e-31
Ricinus communis	29863	17	CH_rco_150	4	4	0.00000793861
Ricinus communis	30128	17	CH_rco_98	5	6	0.00000020509
Ricinus communis	29838	18	CH_rco_1	17	25	6.04853e-31
Solanum lycopersicum	ch01	17	CH_sly_1	30	46	3.39163e-51
Solanum lycopersicum	ch04	17	CH_sly_45	10	15	0.00000000000000782824
Solanum lycopersicum	ch09	17	CH_sly_113	6	6	0.00000000198331
Solanum lycopersicum	ch10	17	CH_sly_467	4	6	0.000779144
Solanum lycopersicum	ch10	17	CH_sly_100	7	9	0.000000000431289
Solanum lycopersicum	ch10	17	CH_sly_73	7	7	0.0000000000121094
Solanum lycopersicum	ch11	17	CH_sly_16	11	11	1.60524e-20
Solanum lycopersicum	ch01	18	CH_sly_1	30	46	3.39163e-51
Solanum lycopersicum	ch04	18	CH_sly_36	10	15	0.00000000000000782824
Solanum lycopersicum	ch10	18	CH_sly_79	11	120	0.000010224
Solanum lycopersicum	ch11	18	CH_sly_16	11	11	1.60524e-20
Vitis vinifera	chr14	17	CH_vvi_86	8	11	0.00000000000101454
Vitis vinifera	chr3	17	CH_vvi_15	15	16	3.23122e-30
Vitis vinifera	chr3	17	CH_vvi_63	8	8	0.00000000000000622426
Vitis vinifera	chr4	17	CH_vvi_33	11	12	6.72873e-21
Vitis vinifera	chr5	17	CH_vvi_204	6	14	0.000000861676
Vitis vinifera	chr9	17	CH_vvi_402	4	7	0.000472192
Vitis vinifera	chr3	18	CH_vvi_16	15	16	3.23122e-30
Vitis vinifera	chr4	18	CH_vvi_32	11	12	6.72873e-21
Zea mays	1	17	CH_zma_70	5	5	0.0000000551173
Zea mays	2	17	CH_zma_12	9	11	8.81387e-16
Zea mays	7	17	CH_zma_147	4	4	0.0000131242
Zea mays	1	19	CH_zma_3	4	4	0.00000674196

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V